Variant report

Variant	rs58619671
Chromosome Location	chr8:69558125-69558126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69552027..69553866-chr8:69558077..69560786,2	MCF-7	breast:
2	chr8:69556547..69558484-chr8:69594454..69596010,2	MCF-7	breast:
3	chr8:69542517..69544160-chr8:69558103..69559635,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11984995	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11992298	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11997399	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934792	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934878	0.85[AMR][1000 genomes]
rs16934930	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55691147	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55718353	0.85[EUR][1000 genomes]
rs55731817	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55820094	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55821789	0.83[AMR][1000 genomes]
rs55851115	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56194107	0.81[EUR][1000 genomes]
rs56405329	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57624575	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60577322	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60704896	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60946548	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6986385	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6987972	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6992870	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7012051	0.85[EUR][1000 genomes]
rs7013783	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73683589	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73683594	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73683595	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73683703	0.85[EUR][1000 genomes]
rs7818791	1.00[ASN][1000 genomes]
rs7818845	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs984415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984878	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987198	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69553200-69560400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:69553200-69560800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:69553200-69560800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:69554000-69559400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:69554000-69560600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:69554200-69559600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:69554400-69560600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:69554600-69559800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links