Variant report

Variant	rs6986385
Chromosome Location	chr8:69610194-69610195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69535028..69537721-chr8:69610175..69612490,2	MCF-7	breast:
2	chr8:69609836..69613809-chr8:69614366..69618965,6	MCF-7	breast:
3	chr8:69532014..69534673-chr8:69610111..69611773,2	MCF-7	breast:
4	chr8:69603997..69607183-chr8:69609527..69612798,4	MCF-7	breast:
5	chr8:69609765..69614722-chr8:69616148..69622047,8	MCF-7	breast:
6	chr8:69604610..69607448-chr8:69608614..69611000,3	MCF-7	breast:
7	chr8:69610109..69611975-chr8:69765057..69767019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165084	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11984995	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11989629	1.00[CEU][hapmap]
rs11989752	1.00[CEU][hapmap]
rs11992298	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993217	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs11993687	1.00[CEU][hapmap]
rs11997399	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16934738	0.85[CEU][hapmap]
rs16934792	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16934878	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16934892	1.00[CEU][hapmap]
rs16934901	1.00[ASW][hapmap];0.82[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs16934903	1.00[CEU][hapmap]
rs16934930	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934945	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16934954	1.00[CEU][hapmap]
rs17388090	1.00[CEU][hapmap]
rs55691147	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55718353	1.00[EUR][1000 genomes]
rs55731817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55820094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55821789	0.83[AMR][1000 genomes]
rs55851115	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56194107	0.96[EUR][1000 genomes]
rs56405329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56706627	0.91[EUR][1000 genomes]
rs57624575	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58619671	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59276657	0.91[EUR][1000 genomes]
rs60577322	0.87[EUR][1000 genomes]
rs60704896	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60946548	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651316	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6987972	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6992870	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012051	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7013783	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7014834	1.00[CEU][hapmap]
rs7015275	1.00[CEU][hapmap]
rs73683589	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683594	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683703	1.00[EUR][1000 genomes]
rs7818791	1.00[CEU][hapmap]
rs7818845	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs984415	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs984878	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs9987198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69609600-69610200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:69609800-69610200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:69609800-69610200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:69609800-69610200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:69609800-69611000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:69609800-69612800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:69609800-69613000	Enhancers	Colon Smooth Muscle	Colon
8	chr8:69610000-69610200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:69610000-69610600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:69610000-69612200	Enhancers	Fetal Stomach	stomach
11	chr8:69610000-69613000	Enhancers	Rectal Smooth Muscle	rectum

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