Variant report

Variant	rs59276657
Chromosome Location	chr8:69636777-69636778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11984995	0.84[EUR][1000 genomes]
rs11992298	0.91[EUR][1000 genomes]
rs16934930	0.91[EUR][1000 genomes]
rs55691147	0.91[EUR][1000 genomes]
rs55718353	0.91[EUR][1000 genomes]
rs55731817	0.91[EUR][1000 genomes]
rs55820094	0.91[EUR][1000 genomes]
rs55851115	0.91[EUR][1000 genomes]
rs56194107	0.87[EUR][1000 genomes]
rs56405329	0.91[EUR][1000 genomes]
rs56706627	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57624575	0.87[EUR][1000 genomes]
rs60704896	0.91[EUR][1000 genomes]
rs60946548	0.91[EUR][1000 genomes]
rs6651316	0.80[EUR][1000 genomes]
rs6986385	0.91[EUR][1000 genomes]
rs6987972	0.87[EUR][1000 genomes]
rs6992870	0.91[EUR][1000 genomes]
rs7012051	0.91[EUR][1000 genomes]
rs7013783	0.91[EUR][1000 genomes]
rs73683589	0.91[EUR][1000 genomes]
rs73683594	0.91[EUR][1000 genomes]
rs73683595	0.91[EUR][1000 genomes]
rs73683703	0.91[EUR][1000 genomes]
rs7818845	0.87[EUR][1000 genomes]
rs984415	0.84[EUR][1000 genomes]
rs9987198	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv818636	chr8:69636599-69642205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69635800-69637400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:69635800-69637400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:69636000-69637200	Enhancers	HUVEC	blood vessel
4	chr8:69636200-69638000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:69636600-69637000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:69636600-69637200	Enhancers	HSMM	muscle
7	chr8:69636600-69638000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:69636600-69638000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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