Variant report

Variant	rs55898106
Chromosome Location	chr6:144064588-144064589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144063490..144065500-chr6:144068197..144069773,2	K562	blood:
2	chr6:144060296..144062270-chr6:144062738..144065749,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57948833	1.00[AMR][1000 genomes]
rs61507358	1.00[AMR][1000 genomes]
rs6922235	1.00[AMR][1000 genomes]
rs6934118	1.00[AMR][1000 genomes]
rs73778689	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778690	1.00[AMR][1000 genomes]
rs73778693	1.00[AMR][1000 genomes]
rs73778694	1.00[AMR][1000 genomes]
rs73778695	1.00[AMR][1000 genomes]
rs73778697	1.00[AMR][1000 genomes]
rs73778699	1.00[AMR][1000 genomes]
rs7754813	1.00[AMR][1000 genomes]
rs7760688	1.00[AMR][1000 genomes]
rs7763597	1.00[AMR][1000 genomes]
rs7773847	1.00[AMR][1000 genomes]
rs7774531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144038600-144075400	Weak transcription	NHEK	skin
2	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:144053600-144073600	Weak transcription	Osteobl	bone
6	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:144056000-144067600	Weak transcription	K562	blood
11	chr6:144056200-144064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:144056800-144065600	Weak transcription	HUVEC	blood vessel
14	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:144060000-144066400	Weak transcription	Fetal Brain Female	brain
16	chr6:144060200-144065200	Enhancers	Placenta	Placenta
17	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:144060600-144074600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:144060800-144074400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:144061200-144064600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:144061400-144064600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:144061400-144064800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:144062400-144064800	Weak transcription	Colonic Mucosa	Colon
26	chr6:144062800-144066400	Enhancers	Stomach Mucosa	stomach
27	chr6:144063000-144075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:144063200-144064600	Enhancers	Right Atrium	heart
29	chr6:144063200-144065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:144063200-144066200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:144063400-144064600	Enhancers	Colon Smooth Muscle	Colon
32	chr6:144063400-144064600	Enhancers	NHDF-Ad	bronchial
33	chr6:144063400-144064800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:144063400-144065600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:144063400-144065600	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:144063400-144066400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:144063400-144066400	Enhancers	Fetal Stomach	stomach
38	chr6:144063400-144066600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:144063400-144066800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:144063400-144067200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:144063400-144067800	Enhancers	Lung	lung
42	chr6:144063400-144068000	Enhancers	Psoas Muscle	Psoas
43	chr6:144063400-144069000	Enhancers	Left Ventricle	heart
44	chr6:144063400-144069200	Enhancers	Fetal Heart	heart
45	chr6:144063400-144070600	Enhancers	H9 Cell Line	embryonic stem cell
46	chr6:144063400-144071400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:144063600-144065000	Weak transcription	Gastric	stomach
48	chr6:144063600-144065000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr6:144063600-144065800	Enhancers	A549	lung
50	chr6:144063600-144066200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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