Variant report

Variant	rs7754813
Chromosome Location	chr6:144205591-144205592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55898106	1.00[AMR][1000 genomes]
rs57948833	1.00[AMR][1000 genomes]
rs61507358	1.00[AMR][1000 genomes]
rs6922235	1.00[AMR][1000 genomes]
rs6934118	1.00[AMR][1000 genomes]
rs73778689	1.00[AMR][1000 genomes]
rs73778690	1.00[AMR][1000 genomes]
rs73778693	1.00[AMR][1000 genomes]
rs73778694	1.00[AMR][1000 genomes]
rs73778695	1.00[AMR][1000 genomes]
rs73778697	1.00[AMR][1000 genomes]
rs73778699	1.00[AMR][1000 genomes]
rs7755147	1.00[YRI][hapmap]
rs7760688	1.00[AMR][1000 genomes]
rs7763597	1.00[AMR][1000 genomes]
rs7773847	1.00[AMR][1000 genomes]
rs7774531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1818800	chr6:144196637-144205591	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1816701	chr6:144196637-144205781	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1816392	chr6:144198860-144205591	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:144203800-144207200	Enhancers	Fetal Muscle Leg	muscle
3	chr6:144204800-144220800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:144205000-144205800	Enhancers	Fetal Stomach	stomach
5	chr6:144205200-144206000	Enhancers	Fetal Lung	lung
6	chr6:144205400-144205600	Active TSS	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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