Variant report

Variant	rs73778694
Chromosome Location	chr6:144125822-144125823
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:144124955-144126375	K562	blood:	n/a	n/a
2	POLR2A	chr6:144125813-144126437	HUVEC	blood vessel:	n/a	n/a
3	CUX1	chr6:144125382-144126260	K562	blood:	n/a	n/a
4	NR2F2	chr6:144125267-144126499	K562	blood:	n/a	n/a
5	ARID3A	chr6:144125575-144126326	K562	blood:	n/a	n/a
6	GATA2	chr6:144125477-144126330	HUVEC	blood vessel:	n/a	chr6:144126124-144126138
7	MAFF	chr6:144125558-144126073	K562	blood:	n/a	n/a
8	TEAD4	chr6:144125069-144126384	K562	blood:	n/a	n/a
9	IRF1	chr6:144125190-144126288	K562	blood:	n/a	chr6:144125964-144125976 chr6:144125965-144125975 chr6:144125965-144125976 chr6:144125961-144125975
10	MAFK	chr6:144125415-144126254	K562	blood:	n/a	n/a
11	TEAD4	chr6:144125527-144126298	K562	blood:	n/a	n/a
12	JUND	chr6:144124974-144126373	K562	blood:	n/a	n/a
13	CEBPD	chr6:144125822-144126275	K562	blood:	n/a	n/a
14	TBL1XR1	chr6:144125640-144126332	K562	blood:	n/a	n/a
15	RCOR1	chr6:144125037-144126352	K562	blood:	n/a	n/a
16	JUN	chr6:144124399-144126429	K562	blood:	n/a	n/a
17	TAL1	chr6:144125724-144126331	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000257065	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55898106	1.00[AMR][1000 genomes]
rs57948833	1.00[AMR][1000 genomes]
rs61507358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922235	1.00[AMR][1000 genomes]
rs6934118	1.00[AMR][1000 genomes]
rs73778689	1.00[AMR][1000 genomes]
rs73778690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778695	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778699	1.00[AMR][1000 genomes]
rs7754813	1.00[AMR][1000 genomes]
rs7760688	1.00[AMR][1000 genomes]
rs7763597	1.00[AMR][1000 genomes]
rs7773847	1.00[AMR][1000 genomes]
rs7774531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
2	chr6:144108000-144130400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:144109800-144136600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:144111000-144143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:144111400-144126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:144111400-144127400	Weak transcription	NHLF	lung
7	chr6:144111400-144140400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:144111600-144126000	Weak transcription	HSMM	muscle
9	chr6:144111600-144149000	Weak transcription	Right Ventricle	heart
10	chr6:144111800-144127200	Weak transcription	NHDF-Ad	bronchial
11	chr6:144111800-144128200	Weak transcription	NHEK	skin
12	chr6:144113800-144129000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:144113800-144132200	Weak transcription	A549	lung
14	chr6:144114000-144127400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:144114200-144126000	Weak transcription	HSMMtube	muscle
16	chr6:144114200-144127000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:144114200-144128000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:144114200-144128600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:144114200-144128800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:144114200-144133200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:144114400-144128600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:144114600-144126200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:144114800-144128600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:144117000-144129000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:144117600-144126600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:144121800-144136800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:144122200-144126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:144122200-144126600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:144122200-144126600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:144122200-144126800	Weak transcription	Aorta	Aorta
31	chr6:144122200-144127600	Weak transcription	Right Atrium	heart
32	chr6:144122200-144127600	Weak transcription	Spleen	Spleen
33	chr6:144122200-144128200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:144122200-144128600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:144122200-144128600	Weak transcription	Adipose Nuclei	Adipose
36	chr6:144122200-144128600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:144122200-144128600	Weak transcription	Fetal Lung	lung
38	chr6:144122200-144128600	Weak transcription	Lung	lung
39	chr6:144122200-144128600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:144122200-144128600	Weak transcription	Stomach Mucosa	stomach
41	chr6:144122200-144128800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:144122200-144131600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:144122200-144132400	Weak transcription	Small Intestine	intestine
44	chr6:144122200-144133000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:144122200-144133200	Weak transcription	Gastric	stomach
46	chr6:144122200-144133800	Weak transcription	Esophagus	oesophagus
47	chr6:144122200-144134200	Weak transcription	Fetal Brain Male	brain
48	chr6:144122200-144139400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:144122200-144140400	Weak transcription	Fetal Heart	heart
50	chr6:144122200-144140600	Weak transcription	Rectal Mucosa Donor 29	rectum

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