Variant report

Variant	rs73778693
Chromosome Location	chr6:144124017-144124018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:144123964-144124690	IMR90	lung:	n/a	chr6:144124500-144124511
2	FOS	chr6:144124014-144124213	MCF10A-Er-Src	breast:	n/a	chr6:144124128-144124136 chr6:144124126-144124137
3	FOS	chr6:144123960-144124344	HUVEC	blood vessel:	n/a	chr6:144124128-144124136 chr6:144124126-144124137
4	MAFK	chr6:144124003-144124250	HepG2	liver:	n/a	chr6:144124128-144124138 chr6:144124127-144124142 chr6:144124129-144124138
5	MYC	chr6:144124014-144124213	MCF10A-Er-Src	breast:	n/a	chr6:144124128-144124137
6	MAFK	chr6:144124006-144124330	K562	blood:	n/a	chr6:144124128-144124138 chr6:144124127-144124142 chr6:144124129-144124138
7	MAFK	chr6:144123965-144124304	IMR90	lung:	n/a	chr6:144124128-144124138 chr6:144124127-144124142 chr6:144124129-144124138

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144123843..144125772-chr6:144126105..144127752,2	K562	blood:

Variant related genes	Relation type
ENSG00000257065	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55898106	1.00[AMR][1000 genomes]
rs57948833	1.00[AMR][1000 genomes]
rs61507358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922235	1.00[AMR][1000 genomes]
rs6934118	1.00[AMR][1000 genomes]
rs73778689	1.00[AMR][1000 genomes]
rs73778690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778695	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778699	1.00[AMR][1000 genomes]
rs7754813	1.00[AMR][1000 genomes]
rs7760688	1.00[AMR][1000 genomes]
rs7763597	1.00[AMR][1000 genomes]
rs7773847	1.00[AMR][1000 genomes]
rs7774531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
2	chr6:144108000-144130400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:144108400-144125400	Weak transcription	NH-A	brain
4	chr6:144109800-144136600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:144111000-144143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:144111400-144126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:144111400-144127400	Weak transcription	NHLF	lung
8	chr6:144111400-144140400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:144111600-144126000	Weak transcription	HSMM	muscle
10	chr6:144111600-144149000	Weak transcription	Right Ventricle	heart
11	chr6:144111800-144127200	Weak transcription	NHDF-Ad	bronchial
12	chr6:144111800-144128200	Weak transcription	NHEK	skin
13	chr6:144113800-144129000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:144113800-144132200	Weak transcription	A549	lung
15	chr6:144114000-144127400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:144114200-144124200	Weak transcription	Ovary	ovary
17	chr6:144114200-144126000	Weak transcription	HSMMtube	muscle
18	chr6:144114200-144127000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:144114200-144128000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:144114200-144128600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:144114200-144128800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:144114200-144133200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:144114400-144128600	Weak transcription	Primary T cells from cord blood	blood
24	chr6:144114600-144126200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:144114800-144128600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:144117000-144129000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:144117600-144126600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:144121800-144125000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:144121800-144136800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:144122200-144124200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:144122200-144124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:144122200-144124400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:144122200-144124400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:144122200-144124400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:144122200-144124400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:144122200-144124600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:144122200-144124800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:144122200-144124800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:144122200-144124800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:144122200-144125000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:144122200-144125000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:144122200-144125200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:144122200-144125200	Weak transcription	Psoas Muscle	Psoas
44	chr6:144122200-144125400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:144122200-144125600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:144122200-144125600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:144122200-144125600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:144122200-144126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:144122200-144126600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:144122200-144126600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links