Variant report

Variant	rs73778689
Chromosome Location	chr6:144109090-144109091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144107727..144110530-chr6:144111714..144114636,3	K562	blood:
2	chr6:144107727..144109791-chr6:144111527..144113701,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55898106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57948833	1.00[AMR][1000 genomes]
rs61507358	1.00[AMR][1000 genomes]
rs6922235	1.00[AMR][1000 genomes]
rs6934118	1.00[AMR][1000 genomes]
rs73778690	1.00[AMR][1000 genomes]
rs73778693	1.00[AMR][1000 genomes]
rs73778694	1.00[AMR][1000 genomes]
rs73778695	1.00[AMR][1000 genomes]
rs73778697	1.00[AMR][1000 genomes]
rs73778699	1.00[AMR][1000 genomes]
rs7754813	1.00[AMR][1000 genomes]
rs7760688	1.00[AMR][1000 genomes]
rs7763597	1.00[AMR][1000 genomes]
rs7773847	1.00[AMR][1000 genomes]
rs7774531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
2	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
3	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
5	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
7	chr6:144085000-144113800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:144085200-144113800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:144087000-144122000	Weak transcription	Pancreas	Pancrea
10	chr6:144088800-144113600	Weak transcription	A549	lung
11	chr6:144092800-144110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:144093200-144112600	Weak transcription	Fetal Kidney	kidney
13	chr6:144096400-144109800	Weak transcription	NHLF	lung
14	chr6:144096400-144122000	Weak transcription	Stomach Mucosa	stomach
15	chr6:144096600-144109200	Weak transcription	Ovary	ovary
16	chr6:144096600-144110000	Weak transcription	Right Ventricle	heart
17	chr6:144096600-144111000	Weak transcription	NHEK	skin
18	chr6:144096600-144113600	Strong transcription	Placenta	Placenta
19	chr6:144096600-144113800	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:144096600-144122000	Weak transcription	Psoas Muscle	Psoas
21	chr6:144098200-144109800	Weak transcription	Esophagus	oesophagus
22	chr6:144098200-144111400	Weak transcription	HSMMtube	muscle
23	chr6:144098400-144113800	Weak transcription	Gastric	stomach
24	chr6:144098600-144109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:144100400-144109400	Weak transcription	Primary T cells from cord blood	blood
26	chr6:144100400-144111000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:144102000-144122000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:144102200-144109800	Weak transcription	Liver	Liver
29	chr6:144102400-144109200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:144102400-144109800	Weak transcription	HUVEC	blood vessel
31	chr6:144102600-144122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:144104200-144109800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:144104200-144110000	Weak transcription	NHDF-Ad	bronchial
34	chr6:144104400-144111000	Weak transcription	HSMM	muscle
35	chr6:144104600-144114200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:144104800-144113600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:144105000-144112200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:144105000-144113400	Strong transcription	Adipose Nuclei	Adipose
39	chr6:144105600-144122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:144105800-144109600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:144105800-144111200	Weak transcription	K562	blood
42	chr6:144106000-144109800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:144106200-144109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:144106200-144111800	Strong transcription	Left Ventricle	heart
45	chr6:144106600-144109800	Weak transcription	Spleen	Spleen
46	chr6:144106600-144110000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:144106600-144110000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr6:144106800-144109800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:144107000-144109800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:144107000-144114000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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