The 2.0 version of rSNPBase

Variant report

Variant rs55936434
Chromosome Location chr3:88146330-88146331
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:88112200-88154200 Weak transcription Muscle Satellite Cultured Cells --
2 chr3:88125200-88163600 Weak transcription NHDF-Ad bronchial
3 chr3:88128800-88198200 Weak transcription Esophagus oesophagus
4 chr3:88129600-88180200 Weak transcription NHEK skin
5 chr3:88129800-88151600 Weak transcription Brain Inferior Temporal Lobe brain
6 chr3:88130600-88155000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr3:88132200-88147000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr3:88133800-88155400 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr3:88134000-88176400 Weak transcription Ovary ovary
10 chr3:88134200-88154400 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr3:88134200-88159400 Weak transcription Fetal Heart heart
12 chr3:88134800-88188200 Weak transcription Stomach Smooth Muscle stomach
13 chr3:88135600-88196800 Weak transcription Hela-S3 cervix
14 chr3:88136600-88148200 Weak transcription Fetal Stomach stomach
15 chr3:88137200-88155000 Weak transcription Left Ventricle heart
16 chr3:88137200-88162600 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr3:88137400-88155400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr3:88137400-88163800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr3:88137400-88188200 Weak transcription Fetal Kidney kidney
20 chr3:88138200-88180800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr3:88139200-88151800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:88139200-88163800 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr3:88140200-88163800 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr3:88140400-88146600 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr3:88140400-88154400 Weak transcription Adipose Nuclei Adipose
26 chr3:88140400-88163800 Weak transcription Primary T cells fromperipheralblood blood
27 chr3:88140400-88167000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr3:88140600-88163200 Weak transcription Fetal Intestine Large intestine
29 chr3:88140600-88163600 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr3:88140800-88148000 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr3:88140800-88150200 Weak transcription Fetal Muscle Trunk muscle
32 chr3:88140800-88162600 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr3:88140800-88162600 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr3:88140800-88162600 Weak transcription HSMM muscle
35 chr3:88140800-88163200 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr3:88140800-88163400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr3:88140800-88176000 Weak transcription K562 blood
38 chr3:88141000-88163600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr3:88141000-88163800 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr3:88141000-88165200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr3:88141000-88197800 Weak transcription Thymus Thymus
42 chr3:88141200-88163400 Weak transcription Primary monocytes fromperipheralblood blood
43 chr3:88141200-88163600 Weak transcription Duodenum Mucosa Duodenum
44 chr3:88141200-88167200 Weak transcription Liver Liver
45 chr3:88141200-88182200 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr3:88141400-88150200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr3:88141400-88162400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr3:88141800-88153000 Weak transcription Right Atrium heart
49 chr3:88142800-88154600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr3:88143000-88150000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015