Variant report

Variant	rs4616670
Chromosome Location	chr3:88139356-88139357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88109216..88112055-chr3:88137682..88139375,2	K562	blood:
2	chr3:88131832..88133596-chr3:88136802..88139464,2	K562	blood:
3	chr3:88131832..88134234-chr3:88137893..88140717,3	K562	blood:

Extended variants
information (count: 217 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs1006895	0.94[ASN][1000 genomes]
rs1040319	0.91[ASN][1000 genomes]
rs1051413	0.94[ASN][1000 genomes]
rs1051436	0.94[ASN][1000 genomes]
rs1063597	0.94[ASN][1000 genomes]
rs1063603	0.94[ASN][1000 genomes]
rs10865625	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11128021	0.98[EUR][1000 genomes]
rs12493327	0.96[EUR][1000 genomes]
rs12631689	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12632529	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13060704	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13060730	0.94[ASN][1000 genomes]
rs13063511	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13067183	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13067419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13076170	0.94[ASN][1000 genomes]
rs13098157	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13317261	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1991659	0.94[ASN][1000 genomes]
rs2049817	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2116149	0.94[ASN][1000 genomes]
rs28694532	0.80[EUR][1000 genomes]
rs3732776	0.94[ASN][1000 genomes]
rs3890707	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4257571	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4273396	0.85[ASN][1000 genomes]
rs4276211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4276212	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4337654	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4368523	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4374552	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4378991	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4384978	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4402954	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4407422	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4414876	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4416403	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4429658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4432672	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4434168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4438681	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4485742	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4501136	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4502603	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4507280	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4518156	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4555548	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4568164	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4580585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4588391	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4596173	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4611846	0.94[ASN][1000 genomes]
rs4638995	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4858931	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858935	0.91[EUR][1000 genomes]
rs4858936	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858937	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858938	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858981	0.94[ASN][1000 genomes]
rs4858982	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4858983	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4858985	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4858992	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4858994	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4858995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858997	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4858998	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858999	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859001	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859002	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859004	0.83[EUR][1000 genomes]
rs4859005	0.83[EUR][1000 genomes]
rs5024148	0.82[AFR][1000 genomes]
rs5024149	0.80[AFR][1000 genomes]
rs55744603	0.96[EUR][1000 genomes]
rs55923163	0.98[EUR][1000 genomes]
rs55936434	0.98[EUR][1000 genomes]
rs60377014	0.96[EUR][1000 genomes]
rs6419866	0.90[AFR][1000 genomes]
rs6419867	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551268	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6551271	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551272	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551273	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551274	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551275	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551277	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551278	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551279	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6551280	0.92[EUR][1000 genomes]
rs6551282	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551283	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551284	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551285	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6551286	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6551288	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6551289	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6551291	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6551292	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6551293	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6551294	0.83[EUR][1000 genomes]
rs6551296	0.80[EUR][1000 genomes]
rs6551298	0.80[EUR][1000 genomes]
rs6762453	0.82[EUR][1000 genomes]
rs6767258	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771031	0.83[EUR][1000 genomes]
rs6777019	0.94[ASN][1000 genomes]
rs6778708	0.82[EUR][1000 genomes]
rs6781333	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6782507	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6785359	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785560	0.80[EUR][1000 genomes]
rs6786788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6787824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790426	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6790629	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6791133	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6792208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795209	0.82[AFR][1000 genomes]
rs6796355	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799233	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6801046	0.83[EUR][1000 genomes]
rs6804818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805804	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6805957	0.83[EUR][1000 genomes]
rs73132515	0.98[EUR][1000 genomes]
rs7427047	0.83[EUR][1000 genomes]
rs7427296	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7427335	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7427704	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7428357	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7429120	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7430158	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7431074	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432509	0.83[EUR][1000 genomes]
rs7432838	0.92[EUR][1000 genomes]
rs7433285	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7615585	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7617691	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618080	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7618472	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7620830	0.98[EUR][1000 genomes]
rs7626777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7628689	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7630028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630240	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7632123	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7633121	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7635996	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639420	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7641173	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7643923	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7648096	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7650707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651641	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7651999	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652528	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7653652	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9310066	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9310067	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9310068	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9310072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310074	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310077	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs959048	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs959049	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs959050	0.94[ASN][1000 genomes]
rs9809661	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9813894	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9814057	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9815738	0.90[AFR][1000 genomes]
rs9821517	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9829873	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9831230	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9832011	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9834468	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9834501	0.94[ASN][1000 genomes]
rs9835178	0.94[ASN][1000 genomes]
rs9835771	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9836364	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9839322	0.85[EUR][1000 genomes]
rs9840953	0.91[ASN][1000 genomes]
rs9841189	0.80[AFR][1000 genomes]
rs9841834	0.83[EUR][1000 genomes]
rs9843550	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9845776	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9846115	0.94[ASN][1000 genomes]
rs9847019	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9847355	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9848258	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9849248	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9849353	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9850892	0.89[ASN][1000 genomes]
rs9851328	0.90[ASN][1000 genomes]
rs9854138	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9856990	0.80[EUR][1000 genomes]
rs9861398	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9864220	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9865335	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865578	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865703	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865710	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865990	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9866349	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9866843	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9868310	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9868977	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9872602	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9876807	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9879044	0.93[ASN][1000 genomes]
rs9881255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4616670	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL
rs4616670	C3orf38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88112200-88154200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:88112400-88143600	Weak transcription	HUVEC	blood vessel
3	chr3:88113200-88146200	Weak transcription	HMEC	breast
4	chr3:88116800-88139800	Weak transcription	Thymus	Thymus
5	chr3:88121800-88141800	Weak transcription	NHLF	lung
6	chr3:88125200-88163600	Weak transcription	NHDF-Ad	bronchial
7	chr3:88125800-88143800	Weak transcription	HepG2	liver
8	chr3:88128200-88139800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:88128400-88142200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:88128800-88198200	Weak transcription	Esophagus	oesophagus
11	chr3:88129400-88144200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:88129600-88180200	Weak transcription	NHEK	skin
13	chr3:88129800-88151600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:88130400-88142600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:88130600-88155000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:88131000-88139800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:88131200-88139600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:88131200-88139800	Weak transcription	Brain Germinal Matrix	brain
19	chr3:88131800-88144400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:88132200-88139800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:88132200-88140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:88132200-88141200	Weak transcription	Spleen	Spleen
23	chr3:88132200-88147000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:88132600-88142600	Weak transcription	Brain Substantia Nigra	brain
25	chr3:88133000-88140000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:88133800-88139800	Weak transcription	Osteobl	bone
27	chr3:88133800-88155400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:88134000-88141600	Weak transcription	Pancreas	Pancrea
29	chr3:88134000-88141800	Weak transcription	HSMMtube	muscle
30	chr3:88134000-88142400	Weak transcription	Psoas Muscle	Psoas
31	chr3:88134000-88176400	Weak transcription	Ovary	ovary
32	chr3:88134200-88139400	Weak transcription	K562	blood
33	chr3:88134200-88139800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:88134200-88141400	Weak transcription	Brain Angular Gyrus	brain
35	chr3:88134200-88142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:88134200-88145000	Weak transcription	Aorta	Aorta
37	chr3:88134200-88154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:88134200-88159400	Weak transcription	Fetal Heart	heart
39	chr3:88134600-88139600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:88134800-88188200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:88135000-88142000	Weak transcription	Placenta	Placenta
42	chr3:88135200-88139800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:88135200-88139800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:88135200-88141000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:88135200-88142000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:88135400-88139800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:88135400-88139800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:88135400-88140400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr3:88135400-88140400	Strong transcription	Fetal Lung	lung
50	chr3:88135400-88140600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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