Variant report

Variant	rs2049817
Chromosome Location	chr3:88109613-88109614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:88109575-88109618	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:88106799-88109738	GM12891	blood:	n/a	n/a
3	MXI1	chr3:88106855-88109876	IMR90	lung:	n/a	n/a
4	MXI1	chr3:88106676-88110397	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr3:88108955-88109817	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:87275003..87277561-chr3:88108674..88111646,3	MCF-7	breast:
2	chr3:88107215..88109971-chr3:88197433..88199191,2	K562	blood:
3	chr3:88106502..88110909-chr3:88195834..88201659,8	MCF-7	breast:
4	chr3:88109216..88112055-chr3:88137682..88139375,2	K562	blood:
5	chr3:88104745..88109799-chr3:88197543..88201780,9	MCF-7	breast:

No data

Variant related genes	Relation type
CGGBP1	TF binding region
ENSG00000264119	Chromatin interaction
ENSG00000163320	Chromatin interaction
ENSG00000083937	Chromatin interaction
ENSG00000179021	Chromatin interaction

Extended variants
information (count: 161 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1006895	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040319	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1051413	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1051436	0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063597	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063603	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865625	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493327	0.94[CEU][hapmap]
rs12495016	0.95[EUR][1000 genomes]
rs12632529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058811	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13060730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063511	0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs13067419	0.91[ASN][1000 genomes]
rs13076170	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098157	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100870	0.80[AFR][1000 genomes]
rs1991659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116149	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732776	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3890707	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4241551	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4257571	0.86[ASN][1000 genomes]
rs4273396	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4276211	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4276212	0.90[ASN][1000 genomes]
rs4337654	0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs4368523	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4374552	0.86[ASN][1000 genomes]
rs4378991	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384978	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4414876	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4416403	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429658	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4432672	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4434168	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4438681	0.94[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485742	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4488864	0.89[ASN][1000 genomes]
rs4501136	0.86[ASN][1000 genomes]
rs4502603	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507280	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4518156	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4555548	0.89[ASN][1000 genomes]
rs4568164	0.81[ASN][1000 genomes]
rs4580585	0.89[ASN][1000 genomes]
rs4588391	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596173	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4611846	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616670	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4638995	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858931	0.94[CEU][hapmap];0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs4858936	0.82[ASN][1000 genomes]
rs4858981	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858983	0.92[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858985	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858992	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858994	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858995	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4858998	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs4858999	0.94[CEU][hapmap];0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs4859001	0.82[ASN][1000 genomes]
rs6419867	0.83[ASN][1000 genomes]
rs6551266	0.85[EUR][1000 genomes]
rs6551268	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6551271	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6551272	1.00[ASW][hapmap];0.94[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs6551273	0.89[ASN][1000 genomes]
rs6551274	0.86[ASN][1000 genomes]
rs6551275	0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs6551277	0.93[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.88[LWK][hapmap];0.81[MEX][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs6551278	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs6551282	0.86[ASN][1000 genomes]
rs6551283	0.86[ASN][1000 genomes]
rs6551284	0.86[ASN][1000 genomes]
rs6551285	0.81[ASN][1000 genomes]
rs6551286	0.82[ASN][1000 genomes]
rs6551288	0.82[ASN][1000 genomes]
rs6551289	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6551291	0.81[ASN][1000 genomes]
rs6767258	0.86[ASN][1000 genomes]
rs6777019	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781333	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs6782507	0.83[ASN][1000 genomes]
rs6785359	0.86[ASN][1000 genomes]
rs6786788	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6787824	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs6790426	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790629	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791133	0.86[ASN][1000 genomes]
rs6792208	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6793783	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6796355	0.89[ASN][1000 genomes]
rs6799233	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804818	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7427704	0.86[ASN][1000 genomes]
rs7429120	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7430158	0.83[ASN][1000 genomes]
rs7432838	0.94[CEU][hapmap];0.85[GIH][hapmap];0.96[TSI][hapmap]
rs7433285	0.86[ASN][1000 genomes]
rs7617691	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7618080	0.89[ASN][1000 genomes]
rs7618472	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620830	0.82[CEU][hapmap]
rs7626777	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7628689	0.86[ASN][1000 genomes]
rs7630028	0.91[ASN][1000 genomes]
rs7630240	0.86[ASN][1000 genomes]
rs7632123	0.81[ASN][1000 genomes]
rs7633121	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635996	0.91[ASN][1000 genomes]
rs7639420	0.89[ASN][1000 genomes]
rs7641173	0.81[ASN][1000 genomes]
rs7643923	0.91[ASN][1000 genomes]
rs7648096	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650707	0.91[ASN][1000 genomes]
rs7651641	0.86[ASN][1000 genomes]
rs7651999	0.94[CEU][hapmap];0.92[CHB][hapmap];0.91[ASN][1000 genomes]
rs7652528	0.82[ASN][1000 genomes]
rs7653652	1.00[ASW][hapmap];0.94[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9310066	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310067	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310068	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310072	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9310074	0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.91[ASN][1000 genomes]
rs9310077	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs959048	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959049	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959050	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.92[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813894	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9814057	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs9821517	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829873	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832011	0.90[ASN][1000 genomes]
rs9834468	0.80[ASN][1000 genomes]
rs9834501	0.94[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835178	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835771	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840953	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9841189	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9845776	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846115	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9847019	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850892	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9851328	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9854138	0.86[ASN][1000 genomes]
rs9861398	0.89[ASN][1000 genomes]
rs9864220	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865335	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9865578	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9865703	0.94[CEU][hapmap];0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs9865710	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9865990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870952	0.94[AFR][1000 genomes]
rs9872602	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879044	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9881255	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2049817	ZNF654	cis	lymphoblastoid	seeQTL
rs2049817	C3orf38	Cis_1M	lymphoblastoid	RTeQTL
rs2049817	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL
rs2049817	CGGBP1	cis	uninvolved skin	skin_eQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88106200-88110400	Active TSS	HSMMtube	muscle
2	chr3:88106400-88110000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:88106400-88110000	Active TSS	Thymus	Thymus
4	chr3:88106400-88110400	Active TSS	HMEC	breast
5	chr3:88106400-88111400	Active TSS	NHLF	lung
6	chr3:88106400-88111600	Active TSS	Right Atrium	heart
7	chr3:88106600-88110000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:88106600-88110000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:88106600-88110400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:88106600-88111200	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr3:88106600-88111200	Active TSS	K562	blood
12	chr3:88106800-88109800	Active TSS	H1 Cell Line	embryonic stem cell
13	chr3:88106800-88109800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr3:88106800-88109800	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr3:88106800-88109800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:88106800-88109800	Active TSS	Hela-S3	cervix
17	chr3:88106800-88110000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr3:88106800-88110000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:88106800-88110000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:88106800-88110000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:88106800-88110000	Active TSS	Brain Cingulate Gyrus	brain
22	chr3:88106800-88110000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:88106800-88110000	Active TSS	Colonic Mucosa	Colon
24	chr3:88106800-88110000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr3:88106800-88110000	Active TSS	Fetal Muscle Leg	muscle
26	chr3:88106800-88110000	Active TSS	Fetal Stomach	stomach
27	chr3:88106800-88110000	Active TSS	Fetal Thymus	thymus
28	chr3:88106800-88110000	Active TSS	Right Ventricle	heart
29	chr3:88106800-88110200	Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:88106800-88110200	Active TSS	NH-A	brain
31	chr3:88106800-88111000	Active TSS	NHDF-Ad	bronchial
32	chr3:88106800-88111200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:88106800-88111200	Active TSS	GM12878-XiMat	blood
34	chr3:88107000-88109800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:88107000-88109800	Active TSS	Fetal Muscle Trunk	muscle
36	chr3:88107000-88109800	Active TSS	Ovary	ovary
37	chr3:88107000-88109800	Active TSS	Rectal Smooth Muscle	rectum
38	chr3:88107000-88110000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:88107000-88110000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:88107000-88110000	Active TSS	Aorta	Aorta
41	chr3:88107000-88110000	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr3:88107000-88110000	Active TSS	Brain Substantia Nigra	brain
43	chr3:88107000-88110000	Active TSS	Duodenum Mucosa	Duodenum
44	chr3:88107000-88110000	Active TSS	Fetal Intestine Large	intestine
45	chr3:88107000-88110000	Active TSS	Psoas Muscle	Psoas
46	chr3:88107000-88110200	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr3:88107200-88109800	Active TSS	Esophagus	oesophagus
48	chr3:88107200-88109800	Active TSS	Left Ventricle	heart
49	chr3:88107200-88110200	Active TSS	HSMM	muscle
50	chr3:88107200-88110400	Active TSS	NHEK	skin

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