Variant report

Variant	rs4485742
Chromosome Location	chr3:88172723-88172724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88172361..88173888-chr3:88181878..88184552,2	K562	blood:
2	chr3:88171939..88174648-chr3:88180004..88182609,2	MCF-7	breast:
3	chr3:88171910..88173875-chr3:88176445..88179015,2	K562	blood:
4	chr3:88169502..88174049-chr3:88196620..88200309,4	MCF-7	breast:
5	chr3:88170096..88173875-chr3:88176090..88178291,3	K562	blood:
6	chr3:88171576..88174508-chr3:88192536..88194378,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163320	Chromatin interaction
ENSG00000229729	Chromatin interaction
ENSG00000179021	Chromatin interaction

Extended variants
information (count: 219 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs1006895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs1040319	0.91[ASN][1000 genomes]
rs1051413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs1051436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1063597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs1063603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs10865625	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11128021	0.97[EUR][1000 genomes]
rs12493327	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12631689	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632529	0.89[ASN][1000 genomes]
rs12714702	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13060704	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060730	0.89[ASN][1000 genomes]
rs13063511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067183	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13067419	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13076170	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs13098157	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[ASN][1000 genomes]
rs13317261	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1991659	0.89[ASN][1000 genomes]
rs2049817	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2116149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs28672845	0.82[ASN][1000 genomes]
rs28694532	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3732776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs3890707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241551	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4257571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4273396	0.80[ASN][1000 genomes]
rs4276211	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4276212	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4337654	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4368523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4374552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4378991	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4384978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402954	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4407422	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4414876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4416403	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4429658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4432672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434168	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4438681	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4488864	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4501136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4502603	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4507280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4518156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4555548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568164	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4580585	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588391	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4596173	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4611846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4616670	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4638995	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4858931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858935	0.93[EUR][1000 genomes]
rs4858936	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858937	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4858938	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4858982	0.89[ASN][1000 genomes]
rs4858983	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4858985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4858992	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4858994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4858995	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858997	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858998	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859002	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859004	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859005	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55744603	0.99[EUR][1000 genomes]
rs55923163	0.97[EUR][1000 genomes]
rs55936434	0.97[EUR][1000 genomes]
rs60377014	0.97[EUR][1000 genomes]
rs6419866	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6419867	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551268	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6551271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551273	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551279	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6551280	0.95[EUR][1000 genomes]
rs6551282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551283	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6551286	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551288	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551291	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6551292	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6551293	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6551294	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6551296	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6551297	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6551298	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6762453	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6767258	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6771031	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6777019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs6778708	0.84[EUR][1000 genomes]
rs6781333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785359	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785560	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6786788	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6787824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790426	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6790629	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6791133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6793783	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795209	0.84[AFR][1000 genomes]
rs6796355	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799233	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6801046	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6804818	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805804	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6805957	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73132515	0.97[EUR][1000 genomes]
rs7427047	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7427296	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7427335	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7427704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7428357	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7429120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7430158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7431074	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7432509	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7432838	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7433285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615585	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7617691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7618080	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7620130	0.82[AFR][1000 genomes]
rs7620830	0.89[CEU][hapmap];0.97[EUR][1000 genomes]
rs7626777	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7628689	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630028	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7632123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7633121	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7635996	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641173	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7643923	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7648096	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7650707	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651641	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652528	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9310067	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9310068	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9310072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9310074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959048	0.89[ASN][1000 genomes]
rs959049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs959050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9809661	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9813894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815738	0.92[AFR][1000 genomes]
rs9821517	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9829873	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9831230	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9832011	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9834468	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9834501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9835178	0.89[ASN][1000 genomes]
rs9835771	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9836364	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9839322	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840953	0.91[ASN][1000 genomes]
rs9841834	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9843550	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9845776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9846115	0.91[ASN][1000 genomes]
rs9847019	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9847355	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9848258	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9849248	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9849353	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850892	0.89[ASN][1000 genomes]
rs9851328	0.85[ASN][1000 genomes]
rs9854138	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9856990	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9861398	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861443	0.81[CHB][hapmap]
rs9864220	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9865335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865990	0.89[ASN][1000 genomes]
rs9866349	0.89[ASN][1000 genomes]
rs9866843	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9868310	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9868977	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9872602	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9873182	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876807	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9879044	0.87[ASN][1000 genomes]
rs9881255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4485742	C3orf38	Cis_1M	lymphoblastoid	RTeQTL
rs4485742	CGGBP1	cis	uninvolved skin	skin_eQTL
rs4485742	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88128800-88198200	Weak transcription	Esophagus	oesophagus
2	chr3:88129600-88180200	Weak transcription	NHEK	skin
3	chr3:88134000-88176400	Weak transcription	Ovary	ovary
4	chr3:88134800-88188200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:88135600-88196800	Weak transcription	Hela-S3	cervix
6	chr3:88137400-88188200	Weak transcription	Fetal Kidney	kidney
7	chr3:88138200-88180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:88140800-88176000	Weak transcription	K562	blood
9	chr3:88141000-88197800	Weak transcription	Thymus	Thymus
10	chr3:88141200-88182200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:88145200-88191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:88145200-88198200	Weak transcription	Aorta	Aorta
13	chr3:88146800-88179600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:88148000-88196400	Weak transcription	Fetal Intestine Small	intestine
15	chr3:88150000-88184600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:88152000-88197000	Weak transcription	Lung	lung
17	chr3:88154800-88183800	Weak transcription	HUVEC	blood vessel
18	chr3:88155400-88188000	Weak transcription	Psoas Muscle	Psoas
19	chr3:88155400-88188200	Weak transcription	Right Ventricle	heart
20	chr3:88155800-88189200	Weak transcription	Colonic Mucosa	Colon
21	chr3:88156000-88189000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:88158800-88179600	Weak transcription	Pancreas	Pancrea
23	chr3:88159600-88174800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:88159600-88180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:88159600-88197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:88160400-88179800	Weak transcription	HSMMtube	muscle
27	chr3:88161000-88197800	Weak transcription	Fetal Stomach	stomach
28	chr3:88161800-88184000	Weak transcription	NH-A	brain
29	chr3:88162200-88180600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:88162200-88188000	Weak transcription	NHLF	lung
31	chr3:88162400-88180200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:88162800-88180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:88162800-88180400	Weak transcription	Osteobl	bone
34	chr3:88162800-88182000	Weak transcription	A549	lung
35	chr3:88162800-88187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:88162800-88191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:88162800-88197200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:88162800-88198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:88163000-88182000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:88163600-88197800	Weak transcription	Gastric	stomach
41	chr3:88163800-88188400	Weak transcription	Fetal Brain Female	brain
42	chr3:88164200-88188200	Weak transcription	Left Ventricle	heart
43	chr3:88164400-88180000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:88164400-88182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:88164400-88184000	Weak transcription	HMEC	breast
46	chr3:88164600-88175800	Weak transcription	Adipose Nuclei	Adipose
47	chr3:88164600-88178800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:88164600-88180600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:88164600-88181000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:88164600-88181000	Weak transcription	HepG2	liver

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