The 2.0 version of rSNPBase

Variant report

Variant rs9865990
Chromosome Location chr3:88113443-88113444
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:88109400-88115000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:88109400-88115000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:88109400-88115400 Weak transcription Lung lung
4 chr3:88109400-88124400 Weak transcription Pancreas Pancrea
5 chr3:88109800-88113600 Weak transcription Placenta Placenta
6 chr3:88109800-88113800 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr3:88109800-88113800 Enhancers Primary T helper cells fromperipheralblood blood
8 chr3:88109800-88115000 Weak transcription Primary T cells fromperipheralblood blood
9 chr3:88109800-88115400 Weak transcription Fetal Intestine Small intestine
10 chr3:88110000-88116600 Weak transcription Thymus Thymus
11 chr3:88110000-88118600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr3:88110000-88120400 Weak transcription Fetal Stomach stomach
13 chr3:88110000-88120400 Weak transcription Fetal Thymus thymus
14 chr3:88110000-88121000 Weak transcription Primary B cells from peripheral blood blood
15 chr3:88110200-88115600 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr3:88110200-88117200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr3:88110200-88124200 Weak transcription Fetal Kidney kidney
18 chr3:88110400-88120200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr3:88110800-88113800 Enhancers Primary T cells from cord blood blood
20 chr3:88111200-88115400 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr3:88111200-88117800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr3:88111400-88113600 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr3:88111400-88113600 Weak transcription Brain Substantia Nigra brain
24 chr3:88111400-88114000 Enhancers Primary hematopoietic stem cells blood
25 chr3:88111400-88115600 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr3:88111400-88116400 Weak transcription Right Ventricle heart
27 chr3:88111400-88117200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr3:88111400-88121600 Weak transcription Fetal Brain Male brain
29 chr3:88111400-88124200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr3:88111400-88133600 Weak transcription Brain Angular Gyrus brain
31 chr3:88111400-88136200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr3:88111400-88136200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr3:88111600-88113800 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr3:88111600-88113800 Enhancers Dnd41 blood
35 chr3:88111600-88114800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr3:88111600-88115800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr3:88111600-88116400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr3:88111600-88116800 Weak transcription Primary B cells from cord blood blood
39 chr3:88111600-88116800 Weak transcription Brain Inferior Temporal Lobe brain
40 chr3:88111600-88118000 Enhancers Primary T helper cells PMA-I stimulated --
41 chr3:88111600-88119800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr3:88111600-88121200 Weak transcription NHLF lung
43 chr3:88111600-88123200 Weak transcription Liver Liver
44 chr3:88111600-88124000 Weak transcription Right Atrium heart
45 chr3:88111600-88124000 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr3:88111600-88124000 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr3:88111600-88124200 Weak transcription Fetal Lung lung
48 chr3:88111600-88135200 Weak transcription HSMM muscle
49 chr3:88111600-88135400 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr3:88111600-88135600 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015