Variant report

Variant	rs4859001
Chromosome Location	chr3:88221517-88221518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88198254..88200113-chr3:88221205..88223839,2	MCF-7	breast:
2	chr3:88220438..88221953-chr3:88224348..88225865,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163320	Chromatin interaction
ENSG00000179021	Chromatin interaction

Extended variants
information (count: 216 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs1006895	0.82[ASN][1000 genomes]
rs1040319	0.85[ASN][1000 genomes]
rs1051413	0.82[ASN][1000 genomes]
rs1051436	0.82[ASN][1000 genomes]
rs1063597	0.82[ASN][1000 genomes]
rs1063603	0.82[ASN][1000 genomes]
rs10865625	0.82[ASN][1000 genomes]
rs11128021	0.92[EUR][1000 genomes]
rs12493327	0.93[EUR][1000 genomes]
rs12631689	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12632529	0.82[ASN][1000 genomes]
rs12714702	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13060704	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13060730	0.82[ASN][1000 genomes]
rs13063511	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13067183	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13067419	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13076170	0.82[ASN][1000 genomes]
rs13098157	0.82[ASN][1000 genomes]
rs13317261	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991659	0.82[ASN][1000 genomes]
rs2049817	0.82[ASN][1000 genomes]
rs2116149	0.82[ASN][1000 genomes]
rs28672845	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28694532	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3732776	0.82[ASN][1000 genomes]
rs3890707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241551	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4257571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4276211	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4276212	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4337654	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4368523	0.82[ASN][1000 genomes]
rs4374552	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4378991	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4384978	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4402954	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4407422	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4414876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4416403	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4429658	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4432672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4434168	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4438681	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4485742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488864	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4501136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4502603	0.82[ASN][1000 genomes]
rs4507280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4518156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4555548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4568164	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4580585	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4588391	0.82[ASN][1000 genomes]
rs4596173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4611846	0.82[ASN][1000 genomes]
rs4616670	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4638995	0.82[ASN][1000 genomes]
rs4858931	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4858935	0.99[EUR][1000 genomes]
rs4858936	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858937	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858938	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858981	0.82[ASN][1000 genomes]
rs4858982	0.82[ASN][1000 genomes]
rs4858983	0.82[ASN][1000 genomes]
rs4858985	0.82[ASN][1000 genomes]
rs4858992	0.82[ASN][1000 genomes]
rs4858994	0.82[ASN][1000 genomes]
rs4858995	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858997	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4858998	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858999	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859002	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859004	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859005	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55744603	0.93[EUR][1000 genomes]
rs55923163	0.92[EUR][1000 genomes]
rs55936434	0.92[EUR][1000 genomes]
rs60377014	0.92[EUR][1000 genomes]
rs6419866	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6419867	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551268	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6551271	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6551272	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551273	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551274	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551275	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551277	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551279	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6551280	0.97[EUR][1000 genomes]
rs6551282	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551283	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551284	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6551286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551289	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551291	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6551292	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551293	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551294	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6551296	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551297	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551298	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6762453	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6767258	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771031	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6777019	0.82[ASN][1000 genomes]
rs6778708	0.90[EUR][1000 genomes]
rs6781333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6782507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6785359	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785560	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6786788	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6787824	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6790426	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6790629	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6791133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792208	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6793783	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795209	0.81[AFR][1000 genomes]
rs6796355	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6799233	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6801046	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6804818	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805804	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6805957	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73132515	0.92[EUR][1000 genomes]
rs7427047	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7427296	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7427335	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7427704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7428357	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7429120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7430158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7431074	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7432509	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7432838	0.97[EUR][1000 genomes]
rs7433285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7615585	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7617691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618080	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7618472	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7620130	0.90[AFR][1000 genomes]
rs7620830	0.92[EUR][1000 genomes]
rs7626777	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7628689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7630028	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7630240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7632123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7633121	0.81[ASN][1000 genomes]
rs7635996	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7639420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641173	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7643923	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7648096	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7650707	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7651641	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7651999	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7652528	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7653652	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310066	0.82[ASN][1000 genomes]
rs9310067	0.82[ASN][1000 genomes]
rs9310068	0.82[ASN][1000 genomes]
rs9310072	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9310074	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9310077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs959048	0.82[ASN][1000 genomes]
rs959049	0.82[ASN][1000 genomes]
rs959050	0.82[ASN][1000 genomes]
rs9809661	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9813894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9814057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815738	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9821517	0.82[ASN][1000 genomes]
rs9829873	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9831230	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9832011	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9834468	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9834501	0.82[ASN][1000 genomes]
rs9835178	0.82[ASN][1000 genomes]
rs9835771	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9836364	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9839322	0.82[EUR][1000 genomes]
rs9840953	0.85[ASN][1000 genomes]
rs9841834	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9843550	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9845776	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9846115	0.85[ASN][1000 genomes]
rs9847019	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9847355	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9848258	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849248	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849353	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9850892	0.82[ASN][1000 genomes]
rs9854138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9856990	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9861398	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9864220	0.82[ASN][1000 genomes]
rs9865335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865703	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865990	0.82[ASN][1000 genomes]
rs9866349	0.82[ASN][1000 genomes]
rs9866843	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9868310	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9868977	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9872602	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9873182	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876807	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9879044	0.81[ASN][1000 genomes]
rs9881255	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4859001	C3orf38	Cis_1M	lymphoblastoid	RTeQTL
rs4859001	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88200800-88221600	Weak transcription	Psoas Muscle	Psoas
2	chr3:88200800-88224400	Weak transcription	Aorta	Aorta
3	chr3:88205600-88222000	Weak transcription	Fetal Stomach	stomach
4	chr3:88205600-88222800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:88205800-88227000	Weak transcription	Lung	lung
6	chr3:88205800-88232400	Weak transcription	Left Ventricle	heart
7	chr3:88206000-88226800	Weak transcription	Ovary	ovary
8	chr3:88206000-88229800	Weak transcription	Thymus	Thymus
9	chr3:88206200-88221800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:88206800-88223400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:88207400-88222200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:88208200-88224600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:88208200-88226600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:88209200-88226400	Weak transcription	Primary B cells from cord blood	blood
15	chr3:88209200-88227800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:88210000-88221800	Weak transcription	Liver	Liver
17	chr3:88211000-88223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:88212200-88222800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:88215400-88227000	Weak transcription	HSMM	muscle
20	chr3:88216200-88222000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:88220600-88223200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:88220800-88223400	Weak transcription	Brain Germinal Matrix	brain
23	chr3:88220800-88229800	Weak transcription	Primary T cells from cord blood	blood

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