The 2.0 version of rSNPBase

Variant report

Variant rs13060730
Chromosome Location chr3:88115415-88115416
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:88109400-88124400 Weak transcription Pancreas Pancrea
2 chr3:88110000-88116600 Weak transcription Thymus Thymus
3 chr3:88110000-88118600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr3:88110000-88120400 Weak transcription Fetal Stomach stomach
5 chr3:88110000-88120400 Weak transcription Fetal Thymus thymus
6 chr3:88110000-88121000 Weak transcription Primary B cells from peripheral blood blood
7 chr3:88110200-88115600 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr3:88110200-88117200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr3:88110200-88124200 Weak transcription Fetal Kidney kidney
10 chr3:88110400-88120200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr3:88111200-88117800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr3:88111400-88115600 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr3:88111400-88116400 Weak transcription Right Ventricle heart
14 chr3:88111400-88117200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr3:88111400-88121600 Weak transcription Fetal Brain Male brain
16 chr3:88111400-88124200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr3:88111400-88133600 Weak transcription Brain Angular Gyrus brain
18 chr3:88111400-88136200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr3:88111400-88136200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr3:88111600-88115800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr3:88111600-88116400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr3:88111600-88116800 Weak transcription Primary B cells from cord blood blood
23 chr3:88111600-88116800 Weak transcription Brain Inferior Temporal Lobe brain
24 chr3:88111600-88118000 Enhancers Primary T helper cells PMA-I stimulated --
25 chr3:88111600-88119800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr3:88111600-88121200 Weak transcription NHLF lung
27 chr3:88111600-88123200 Weak transcription Liver Liver
28 chr3:88111600-88124000 Weak transcription Right Atrium heart
29 chr3:88111600-88124000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr3:88111600-88124000 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr3:88111600-88124200 Weak transcription Fetal Lung lung
32 chr3:88111600-88135200 Weak transcription HSMM muscle
33 chr3:88111600-88135400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr3:88111600-88135600 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr3:88111800-88123600 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr3:88111800-88135400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr3:88112000-88115800 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr3:88112200-88136600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr3:88112200-88154200 Weak transcription Muscle Satellite Cultured Cells --
40 chr3:88112400-88116400 Weak transcription Aorta Aorta
41 chr3:88112400-88117200 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr3:88112400-88117200 Weak transcription Fetal Heart heart
43 chr3:88112400-88121200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr3:88112400-88124400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr3:88112400-88143600 Weak transcription HUVEC blood vessel
46 chr3:88112600-88116400 Weak transcription Psoas Muscle Psoas
47 chr3:88113000-88117200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr3:88113200-88116200 Weak transcription K562 blood
49 chr3:88113200-88146200 Weak transcription HMEC breast
50 chr3:88113400-88115600 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015