The 2.0 version of rSNPBase

Variant report

Variant rs6419867
Chromosome Location chr3:88216438-88216439
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:88199800-88216800 Weak transcription Esophagus oesophagus
2 chr3:88200800-88218000 Weak transcription Pancreas Pancrea
3 chr3:88200800-88221600 Weak transcription Psoas Muscle Psoas
4 chr3:88200800-88224400 Weak transcription Aorta Aorta
5 chr3:88204400-88217400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr3:88205600-88217600 Weak transcription Fetal Intestine Small intestine
7 chr3:88205600-88222000 Weak transcription Fetal Stomach stomach
8 chr3:88205600-88222800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr3:88205800-88217800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr3:88205800-88220200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr3:88205800-88227000 Weak transcription Lung lung
12 chr3:88205800-88232400 Weak transcription Left Ventricle heart
13 chr3:88206000-88217800 Weak transcription Fetal Muscle Leg muscle
14 chr3:88206000-88226800 Weak transcription Ovary ovary
15 chr3:88206000-88229800 Weak transcription Thymus Thymus
16 chr3:88206200-88221200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr3:88206200-88221800 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr3:88206600-88217400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr3:88206800-88223400 Weak transcription Fetal Muscle Trunk muscle
20 chr3:88207400-88222200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr3:88208000-88218800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr3:88208200-88217000 Weak transcription A549 lung
23 chr3:88208200-88217000 Weak transcription GM12878-XiMat blood
24 chr3:88208200-88217200 Weak transcription H1 Cell Line embryonic stem cell
25 chr3:88208200-88217200 Weak transcription Brain Inferior Temporal Lobe brain
26 chr3:88208200-88220400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr3:88208200-88224600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr3:88208200-88226600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr3:88208400-88220400 Weak transcription Brain Germinal Matrix brain
30 chr3:88208600-88217400 Weak transcription Fetal Thymus thymus
31 chr3:88209200-88226400 Weak transcription Primary B cells from cord blood blood
32 chr3:88209200-88227800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr3:88210000-88221800 Weak transcription Liver Liver
34 chr3:88210800-88218000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr3:88211000-88216600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr3:88211000-88223800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr3:88211200-88218000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr3:88211800-88217000 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr3:88212000-88221400 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr3:88212200-88217000 Weak transcription Osteobl bone
41 chr3:88212200-88217200 Weak transcription Primary monocytes fromperipheralblood blood
42 chr3:88212200-88222800 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr3:88212400-88216600 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr3:88212400-88217200 Weak transcription Primary B cells from peripheral blood blood
45 chr3:88212400-88218000 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr3:88212600-88219800 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr3:88213000-88217000 Weak transcription Dnd41 blood
48 chr3:88214000-88217600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr3:88214800-88217000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr3:88214800-88221200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015