Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16949906	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16949912	0.96[EUR][1000 genomes]
rs56081055	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56214360	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56745423	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57783318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58620285	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60160304	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7326815	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7330454	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7331263	1.00[EUR][1000 genomes]
rs73543042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544881	0.96[EUR][1000 genomes]
rs73544886	0.96[EUR][1000 genomes]
rs73546604	1.00[EUR][1000 genomes]
rs73557842	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557852	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557889	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557896	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557899	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73559736	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73559740	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74103971	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74103990	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7985219	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs927797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95188600-95200000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:95188800-95200200	Weak transcription	Primary T cells from cord blood	blood
3	chr13:95194400-95195000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: