Variant report

Variant	rs56081055
Chromosome Location	chr13:95160552-95160553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95157773..95160608-chr13:95253108..95254690,2	K562	blood:

Variant related genes	Relation type
ENSG00000152749	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16949906	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16949912	0.96[EUR][1000 genomes]
rs56021066	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56214360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56745423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57783318	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58620285	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60160304	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7326815	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7330454	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7331263	0.92[EUR][1000 genomes]
rs73543042	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73544881	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544886	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546604	0.92[EUR][1000 genomes]
rs73557842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73559736	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73559740	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74103971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103990	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7985219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs927797	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv976069	chr13:95160348-95162152	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95159000-95160800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr13:95159000-95161200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr13:95159200-95160800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr13:95159200-95161200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr13:95159600-95160800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr13:95159600-95161800	Enhancers	Dnd41	blood
7	chr13:95159800-95160600	Enhancers	Fetal Thymus	thymus
8	chr13:95159800-95160800	Enhancers	Primary T cells from cord blood	blood

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