Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
2	chr13:95188685..95191659-chr13:95200343..95202520,3	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16949906	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16949912	0.96[EUR][1000 genomes]
rs56021066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56081055	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56214360	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56745423	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57783318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58620285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60160304	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7326815	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7330454	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7331263	1.00[EUR][1000 genomes]
rs73543042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544881	0.96[EUR][1000 genomes]
rs73544886	0.96[EUR][1000 genomes]
rs73546604	1.00[EUR][1000 genomes]
rs73557842	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557852	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557889	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557896	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73557899	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73559736	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73559740	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74103971	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74103990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7985219	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs927797	FABP4	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95188600-95200000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:95188800-95200200	Weak transcription	Primary T cells from cord blood	blood
3	chr13:95189600-95191000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:95189600-95191400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr13:95190000-95191000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:95190000-95191400	Enhancers	Placenta	Placenta
7	chr13:95190400-95191000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:95190800-95191000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:95190800-95191200	Enhancers	HUES48 Cell Line	embryonic stem cell

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