Variant report

Variant	rs73544881
Chromosome Location	chr13:95200714-95200715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95188685..95191659-chr13:95200343..95202520,3	K562	blood:
2	chr12:46121170..46122152-chr13:95200686..95201507,2	Hela-S3	cervix:
3	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
4	chr13:95200681..95202256-chr13:95253004..95255314,2	K562	blood:
5	chr13:95200681..95202448-chr13:95253004..95255779,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TGDS-1	chr13:95200354-95201818	NONHSAT034727

Variant related genes	Relation type
ENSG00000273015	Chromatin interaction
ENSG00000152749	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16949906	0.93[EUR][1000 genomes]
rs16949912	0.93[EUR][1000 genomes]
rs56021066	0.96[EUR][1000 genomes]
rs56081055	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56214360	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56745423	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57783318	0.96[EUR][1000 genomes]
rs58620285	0.93[EUR][1000 genomes]
rs60160304	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7326815	0.93[EUR][1000 genomes]
rs7330454	0.93[EUR][1000 genomes]
rs7331263	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73543042	0.96[EUR][1000 genomes]
rs73544886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546604	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557842	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557852	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557889	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557896	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557899	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73559736	0.93[EUR][1000 genomes]
rs73559740	0.93[EUR][1000 genomes]
rs74103971	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74103990	0.93[EUR][1000 genomes]
rs7985219	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs927797	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3519385	chr13:95196826-95201400	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3519397	chr13:95196826-95201400	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv20033	chr13:95196987-95201267	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv562757	chr13:95197273-95201200	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv562758	chr13:95197434-95201200	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv562759	chr13:95197666-95201200	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95196400-95200800	Weak transcription	Pancreas	Pancrea
2	chr13:95197200-95200800	Weak transcription	Right Atrium	heart
3	chr13:95197800-95200800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:95199200-95200800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:95199200-95200800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:95199200-95201000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:95199400-95200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:95199400-95200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:95199400-95200800	Weak transcription	Gastric	stomach
10	chr13:95199400-95201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr13:95199600-95200800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr13:95199800-95200800	Enhancers	Primary B cells from peripheral blood	blood
13	chr13:95199800-95200800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:95200000-95200800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr13:95200000-95200800	Enhancers	Fetal Thymus	thymus
16	chr13:95200200-95200800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:95200200-95200800	Enhancers	Osteobl	bone
18	chr13:95200200-95201200	Flanking Active TSS	GM12878-XiMat	blood
19	chr13:95200400-95200800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr13:95200400-95200800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr13:95200400-95200800	Enhancers	Primary hematopoietic stem cells	blood
22	chr13:95200400-95200800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:95200400-95200800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr13:95200400-95200800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:95200400-95200800	Enhancers	Liver	Liver
26	chr13:95200400-95200800	Enhancers	Brain Hippocampus Middle	brain
27	chr13:95200400-95200800	Enhancers	Colonic Mucosa	Colon
28	chr13:95200400-95200800	Enhancers	Colon Smooth Muscle	Colon
29	chr13:95200400-95200800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr13:95200400-95200800	Enhancers	Fetal Intestine Large	intestine
31	chr13:95200400-95200800	Enhancers	Fetal Intestine Small	intestine
32	chr13:95200400-95200800	Enhancers	Fetal Lung	lung
33	chr13:95200400-95200800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr13:95200400-95200800	Flanking Active TSS	HepG2	liver
35	chr13:95200400-95200800	Flanking Active TSS	NHDF-Ad	bronchial
36	chr13:95200400-95201000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:95200400-95201000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:95200400-95201000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr13:95200400-95201000	Enhancers	Fetal Heart	heart
40	chr13:95200400-95201000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr13:95200400-95201000	Enhancers	Stomach Mucosa	stomach
42	chr13:95200400-95201200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr13:95200400-95201200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:95200400-95201200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr13:95200400-95201400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:95200400-95201600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:95200400-95201800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr13:95200400-95202200	Flanking Active TSS	Dnd41	blood
49	chr13:95200400-95202400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr13:95200400-95203000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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