Variant report

Variant	rs7331263
Chromosome Location	chr13:95208097-95208098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95201752..95203295-chr13:95205384..95208174,2	MCF-7	breast:
2	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16949906	0.96[EUR][1000 genomes]
rs16949912	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56021066	1.00[EUR][1000 genomes]
rs56081055	0.92[EUR][1000 genomes]
rs56214360	0.92[EUR][1000 genomes]
rs56745423	0.92[EUR][1000 genomes]
rs57783318	1.00[EUR][1000 genomes]
rs58620285	0.96[EUR][1000 genomes]
rs60160304	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7326815	0.96[EUR][1000 genomes]
rs7330454	0.96[EUR][1000 genomes]
rs73543042	1.00[EUR][1000 genomes]
rs73544881	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544886	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557842	0.92[EUR][1000 genomes]
rs73557852	0.92[EUR][1000 genomes]
rs73557889	0.92[EUR][1000 genomes]
rs73557896	0.92[EUR][1000 genomes]
rs73557899	0.92[EUR][1000 genomes]
rs73559736	0.96[EUR][1000 genomes]
rs73559740	0.96[EUR][1000 genomes]
rs74103971	0.92[EUR][1000 genomes]
rs74103990	0.96[EUR][1000 genomes]
rs7985219	0.92[EUR][1000 genomes]
rs927797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95202400-95208800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:95202600-95221400	Weak transcription	Gastric	stomach
3	chr13:95202800-95208200	Weak transcription	Brain Germinal Matrix	brain
4	chr13:95202800-95210400	Weak transcription	Thymus	Thymus
5	chr13:95202800-95221400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:95202800-95222000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:95202800-95223600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:95203000-95221200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr13:95203000-95221400	Weak transcription	Fetal Intestine Small	intestine
10	chr13:95203000-95222400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:95203200-95220800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:95203200-95220800	Weak transcription	Fetal Intestine Large	intestine
13	chr13:95203200-95222200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:95203400-95222400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:95203400-95222600	Weak transcription	A549	lung
16	chr13:95204800-95214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:95205000-95208600	Weak transcription	Placenta	Placenta
18	chr13:95205200-95211200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:95207600-95210600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:95208000-95210200	Enhancers	Adipose Nuclei	Adipose

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