Variant report
| Variant | rs73559736 |
|---|---|
| Chromosome Location | chr13:95171679-95171680 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:95165821..95169962-chr13:95170967..95173736,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs16949906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16949912 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56021066 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56081055 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56214360 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56745423 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs57783318 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs58620285 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60160304 | 1.00[EUR][1000 genomes] |
| rs7326815 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7330454 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7331263 | 0.96[EUR][1000 genomes] |
| rs73543042 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73544881 | 0.93[EUR][1000 genomes] |
| rs73544886 | 0.93[EUR][1000 genomes] |
| rs73546604 | 0.96[EUR][1000 genomes] |
| rs73557842 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73557852 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73557889 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73557896 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73557899 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73559740 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74103971 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs74103990 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7985219 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs927797 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34004 | chr13:94906537-95392644 | Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95168600-95173400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr13:95171200-95172000 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
