Variant report

Variant	rs56089411
Chromosome Location	chr5:91839594-91839595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55683670	0.80[EUR][1000 genomes]
rs55889336	0.80[EUR][1000 genomes]
rs55917692	0.93[EUR][1000 genomes]
rs56137763	0.93[EUR][1000 genomes]
rs56327984	0.93[EUR][1000 genomes]
rs57858513	0.80[EUR][1000 genomes]
rs66504658	0.80[EUR][1000 genomes]
rs66897185	0.80[EUR][1000 genomes]
rs67222609	0.80[EUR][1000 genomes]
rs67283227	0.80[EUR][1000 genomes]
rs67655085	0.80[EUR][1000 genomes]
rs67856059	0.80[EUR][1000 genomes]
rs72779018	0.93[EUR][1000 genomes]
rs72779026	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.80[EUR][1000 genomes]
rs72779049	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4915	chr5:91836073-91876327	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91836600-91841600	Weak transcription	Fetal Lung	lung
2	chr5:91838600-91841400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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