Variant report

Variant	rs55683670
Chromosome Location	chr5:91916901-91916902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55652400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917692	0.86[EUR][1000 genomes]
rs56089411	0.80[EUR][1000 genomes]
rs56137763	0.86[EUR][1000 genomes]
rs56327984	0.86[EUR][1000 genomes]
rs57471978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779018	0.86[EUR][1000 genomes]
rs72779026	0.86[EUR][1000 genomes]
rs72779033	0.80[EUR][1000 genomes]
rs72779034	0.80[EUR][1000 genomes]
rs72779039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91916600-91917000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:91916600-91917000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:91916600-91917400	Enhancers	Fetal Heart	heart

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