Variant report

Variant	rs60362039
Chromosome Location	chr5:91930395-91930396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55652400	1.00[ASN][1000 genomes]
rs55683670	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57471978	1.00[ASN][1000 genomes]
rs57858513	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779039	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3405498	chr5:91928296-91932894	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91929200-91930600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:91929200-91930600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:91929400-91930400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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