Variant report

Variant	rs67856059
Chromosome Location	chr5:91896294-91896295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr5:91895314-91898205	A549	lung:	n/a	n/a
2	RAD21	chr5:91896280-91896670	A549	lung:	n/a	n/a
3	REST	chr5:91896192-91897027	A549	lung:	n/a	n/a
4	EP300	chr5:91896077-91898194	A549	lung:	n/a	chr5:91897960-91897970 chr5:91896293-91896307 chr5:91897948-91897958 chr5:91897440-91897449 chr5:91897439-91897448 chr5:91897036-91897050 chr5:91896719-91896735
5	GATA3	chr5:91894636-91898248	A549	lung:	n/a	chr5:91896945-91896955 chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897065-91897086 chr5:91895161-91895172 chr5:91897529-91897538 chr5:91897529-91897536
6	TCF12	chr5:91896283-91896972	A549	lung:	n/a	n/a
7	GATA3	chr5:91895395-91896774	SK-N-SH	brain:	n/a	n/a
8	MAFF	chr5:91896228-91896666	HepG2	liver:	n/a	chr5:91896476-91896494
9	SP1	chr5:91896245-91897278	HCT-116	colon:	n/a	n/a
10	MAFK	chr5:91895454-91897534	Hela-S3	cervix:	n/a	chr5:91896473-91896490 chr5:91896359-91896373 chr5:91896482-91896493 chr5:91896482-91896493 chr5:91896477-91896492 chr5:91896481-91896492
11	JUND	chr5:91896237-91897167	HCT-116	colon:	n/a	chr5:91896476-91896488
12	SP1	chr5:91896284-91897642	HCT-116	colon:	n/a	n/a
13	POLR2A	chr5:91896234-91897008	U87	brain:	n/a	n/a
14	MAX	chr5:91896260-91897737	A549	lung:	n/a	chr5:91897440-91897449
15	MAX	chr5:91896260-91897029	A549	lung:	n/a	n/a
16	KAP1	chr5:91895051-91896960	U2OS	brain:	n/a	n/a
17	FOSL2	chr5:91896291-91896649	A549	lung:	n/a	chr5:91896476-91896488
18	TCF12	chr5:91895198-91898143	A549	lung:	n/a	n/a
19	EP300	chr5:91895085-91898176	A549	lung:	n/a	chr5:91897960-91897970 chr5:91895371-91895385 chr5:91896293-91896307 chr5:91897948-91897958 chr5:91897440-91897449 chr5:91895786-91895800 chr5:91897439-91897448 chr5:91897036-91897050 chr5:91896719-91896735
20	BCL3	chr5:91896061-91897767	A549	lung:	n/a	chr5:91897439-91897448 chr5:91897440-91897449
21	MAFK	chr5:91896294-91896665	HepG2	liver:	n/a	chr5:91896473-91896490 chr5:91896359-91896373 chr5:91896482-91896493 chr5:91896482-91896493 chr5:91896477-91896492 chr5:91896481-91896492
22	POLR2A	chr5:91896235-91897002	SK-N-MC	brain:	n/a	n/a
23	FOSL1	chr5:91896174-91897615	HCT-116	colon:	n/a	chr5:91896476-91896488 chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
24	FOSL2	chr5:91896146-91897688	A549	lung:	n/a	chr5:91896476-91896488 chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897630-91897642 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
25	TEAD4	chr5:91896207-91896993	A549	lung:	n/a	n/a
26	SP1	chr5:91896160-91897213	A549	lung:	n/a	n/a
27	POLR2A	chr5:91896263-91897782	PANC-1	pancreas:	n/a	n/a
28	RAD21	chr5:91896191-91897062	A549	lung:	n/a	n/a
29	MAFK	chr5:91895823-91896842	IMR90	lung:	n/a	chr5:91896473-91896490 chr5:91896359-91896373 chr5:91896482-91896493 chr5:91896482-91896493 chr5:91896477-91896492 chr5:91896481-91896492
30	CEBPB	chr5:91896179-91897761	A549	lung:	n/a	chr5:91897035-91897046 chr5:91897037-91897048

Variant related genes	Relation type
ENSG00000249776	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55652400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683670	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917692	0.86[EUR][1000 genomes]
rs56089411	0.80[EUR][1000 genomes]
rs56137763	0.86[EUR][1000 genomes]
rs56327984	0.86[EUR][1000 genomes]
rs57471978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779018	0.86[EUR][1000 genomes]
rs72779026	0.86[EUR][1000 genomes]
rs72779033	0.80[EUR][1000 genomes]
rs72779034	0.80[EUR][1000 genomes]
rs72779039	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137061	0.88[AFR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91894000-91897600	Enhancers	Fetal Kidney	kidney
2	chr5:91894000-91900000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:91894400-91897200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:91894600-91896600	Enhancers	Hela-S3	cervix
5	chr5:91894600-91897000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:91894600-91898800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:91894600-91899000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:91894800-91896800	Flanking Active TSS	A549	lung
9	chr5:91894800-91897800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:91895000-91896600	Enhancers	NH-A	brain
11	chr5:91895000-91897000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:91895000-91897200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:91895000-91897400	Enhancers	HSMM	muscle
14	chr5:91895000-91897600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:91895000-91898000	Enhancers	Osteobl	bone
16	chr5:91895000-91898800	Enhancers	NHDF-Ad	bronchial
17	chr5:91895200-91897400	Enhancers	HMEC	breast
18	chr5:91895200-91897800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:91895400-91896600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:91895400-91897600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:91895600-91896800	Enhancers	NHLF	lung
22	chr5:91895800-91897200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:91895800-91897200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:91895800-91897400	Enhancers	Fetal Brain Female	brain
25	chr5:91895800-91898000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:91896000-91896400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:91896000-91896400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:91896200-91896400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:91896200-91896600	Weak transcription	Brain Germinal Matrix	brain
30	chr5:91896200-91897000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:91896200-91897000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr5:91896200-91898200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links