Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:91847403..91850358-chr5:91853737..91855883,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55652400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683670	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917692	0.80[EUR][1000 genomes]
rs56137763	0.80[EUR][1000 genomes]
rs56327984	0.80[EUR][1000 genomes]
rs57471978	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779018	0.80[EUR][1000 genomes]
rs72779026	0.80[EUR][1000 genomes]
rs72779039	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137018	0.81[AFR][1000 genomes]
rs73137020	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4915	chr5:91836073-91876327	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91848000-91849600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:91848400-91849600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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