Variant report

Variant	rs57471978
Chromosome Location	chr5:91841583-91841584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55652400	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683670	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	1.00[ASN][1000 genomes]
rs66504658	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779039	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4915	chr5:91836073-91876327	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91836600-91841600	Weak transcription	Fetal Lung	lung
2	chr5:91840000-91842200	Enhancers	HUVEC	blood vessel
3	chr5:91840200-91841600	Enhancers	Dnd41	blood
4	chr5:91840200-91844000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:91840400-91841800	Enhancers	Hela-S3	cervix
6	chr5:91840600-91841800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:91840800-91841800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:91840800-91841800	Active TSS	Osteobl	bone
9	chr5:91841000-91841600	Weak transcription	NHLF	lung
10	chr5:91841200-91842200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:91841400-91841600	Enhancers	Liver	Liver
12	chr5:91841400-91841600	Flanking Active TSS	A549	lung
13	chr5:91841400-91841800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:91841400-91841800	Active TSS	Ovary	ovary
15	chr5:91841400-91841800	Active TSS	Stomach Smooth Muscle	stomach
16	chr5:91841400-91842000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr5:91841400-91842000	Active TSS	HepG2	liver
18	chr5:91841400-91842000	Active TSS	NHDF-Ad	bronchial
19	chr5:91841400-91842200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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