Variant report

Variant	rs67222609
Chromosome Location	chr5:91897607-91897608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:91897248-91897740	MCF-7	breast:	n/a	chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897529-91897538 chr5:91897529-91897536
2	SP1	chr5:91895314-91898205	A549	lung:	n/a	n/a
3	GATA3	chr5:91896847-91897830	SK-N-SH	brain:	n/a	chr5:91896945-91896955 chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897065-91897086 chr5:91897529-91897538 chr5:91897529-91897536
4	EP300	chr5:91896077-91898194	A549	lung:	n/a	chr5:91897960-91897970 chr5:91896293-91896307 chr5:91897948-91897958 chr5:91897440-91897449 chr5:91897439-91897448 chr5:91897036-91897050 chr5:91896719-91896735
5	GATA3	chr5:91897264-91897646	SH-SY5Y	brain:	n/a	chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897529-91897538 chr5:91897529-91897536
6	GATA3	chr5:91894636-91898248	A549	lung:	n/a	chr5:91896945-91896955 chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897065-91897086 chr5:91895161-91895172 chr5:91897529-91897538 chr5:91897529-91897536
7	TBP	chr5:91896972-91897903	Hela-S3	cervix:	n/a	n/a
8	PRDM1	chr5:91897258-91897897	Hela-S3	cervix:	n/a	chr5:91897440-91897449
9	EP300	chr5:91896539-91897744	Hela-S3	cervix:	n/a	chr5:91897440-91897449 chr5:91897439-91897448 chr5:91897036-91897050 chr5:91896719-91896735
10	GATA3	chr5:91897355-91897692	T-47D	breast:	n/a	chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897529-91897538 chr5:91897529-91897536
11	TCF12	chr5:91896941-91897783	SK-N-SH	brain:	n/a	n/a
12	SP1	chr5:91896284-91897642	HCT-116	colon:	n/a	n/a
13	TCF7L2	chr5:91896608-91897719	Hela-S3	cervix:	n/a	chr5:91897440-91897449
14	PBX3	chr5:91897080-91897816	SK-N-SH	brain:	n/a	n/a
15	MAX	chr5:91896260-91897737	A549	lung:	n/a	chr5:91897440-91897449
16	TCF12	chr5:91895198-91898143	A549	lung:	n/a	n/a
17	RFX5	chr5:91896715-91897936	Hela-S3	cervix:	n/a	n/a
18	EP300	chr5:91895085-91898176	A549	lung:	n/a	chr5:91897960-91897970 chr5:91895371-91895385 chr5:91896293-91896307 chr5:91897948-91897958 chr5:91897440-91897449 chr5:91895786-91895800 chr5:91897439-91897448 chr5:91897036-91897050 chr5:91896719-91896735
19	JUND	chr5:91896347-91897678	Hela-S3	cervix:	n/a	chr5:91896476-91896488 chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897630-91897642 chr5:91897438-91897449 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
20	FOSL2	chr5:91896973-91897762	SK-N-SH	brain:	n/a	chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897630-91897642 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
21	TEAD4	chr5:91897093-91897671	A549	lung:	n/a	n/a
22	BCL3	chr5:91896061-91897767	A549	lung:	n/a	chr5:91897439-91897448 chr5:91897440-91897449
23	EP300	chr5:91897074-91897723	SK-N-SH_RA	brain:	n/a	chr5:91897440-91897449 chr5:91897439-91897448
24	TCF7L2	chr5:91896323-91897971	PANC-1	pancreas:	n/a	chr5:91897440-91897449
25	CEBPB	chr5:91896389-91897801	Hela-S3	cervix:	n/a	chr5:91897035-91897046 chr5:91897037-91897048
26	GATA3	chr5:91897140-91897774	A549	lung:	n/a	chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897529-91897538 chr5:91897529-91897536
27	FOSL1	chr5:91896174-91897615	HCT-116	colon:	n/a	chr5:91896476-91896488 chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
28	FOSL2	chr5:91896146-91897688	A549	lung:	n/a	chr5:91896476-91896488 chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897630-91897642 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
29	STAT3	chr5:91896805-91897658	Hela-S3	cervix:	n/a	chr5:91897440-91897449 chr5:91896826-91896833 chr5:91897439-91897448
30	GATA3	chr5:91896861-91897972	SK-N-SH	brain:	n/a	chr5:91896945-91896955 chr5:91897528-91897538 chr5:91897525-91897541 chr5:91897526-91897536 chr5:91897065-91897086 chr5:91897529-91897538 chr5:91897529-91897536
31	POLR2A	chr5:91896263-91897782	PANC-1	pancreas:	n/a	n/a
32	FOS	chr5:91897131-91897714	Hela-S3	cervix:	n/a	chr5:91897440-91897449 chr5:91897206-91897214 chr5:91897630-91897642 chr5:91897441-91897448 chr5:91897439-91897448 chr5:91897440-91897448
33	RCOR1	chr5:91897183-91897643	Hela-S3	cervix:	n/a	n/a
34	TCF7L2	chr5:91896310-91897856	HEK293	kidney:	n/a	chr5:91897440-91897449
35	TCF12	chr5:91897052-91897688	SK-N-SH	brain:	n/a	n/a
36	CEBPB	chr5:91896179-91897761	A549	lung:	n/a	chr5:91897035-91897046 chr5:91897037-91897048

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:91888137..91888851-chr5:91897070..91897881,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000249776	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55652400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683670	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889336	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917692	0.86[EUR][1000 genomes]
rs56089411	0.80[EUR][1000 genomes]
rs56137763	0.86[EUR][1000 genomes]
rs56327984	0.86[EUR][1000 genomes]
rs57471978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779018	0.86[EUR][1000 genomes]
rs72779026	0.86[EUR][1000 genomes]
rs72779033	0.80[EUR][1000 genomes]
rs72779034	0.80[EUR][1000 genomes]
rs72779039	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137034	0.91[AFR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91894000-91900000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:91894600-91898800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:91894600-91899000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:91894800-91897800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:91895000-91898000	Enhancers	Osteobl	bone
6	chr5:91895000-91898800	Enhancers	NHDF-Ad	bronchial
7	chr5:91895200-91897800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:91895800-91898000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:91896200-91898200	Enhancers	Fetal Lung	lung
10	chr5:91896400-91898000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:91896400-91898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:91896600-91898600	Enhancers	Brain Germinal Matrix	brain
13	chr5:91897000-91898000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:91897000-91898000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:91897000-91898000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:91897000-91898600	Enhancers	Hela-S3	cervix
17	chr5:91897400-91898600	Flanking Active TSS	A549	lung
18	chr5:91897600-91898200	Enhancers	NH-A	brain
19	chr5:91897600-91898600	Weak transcription	Fetal Kidney	kidney

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