Variant report

Variant	rs55889336
Chromosome Location	chr5:91880745-91880746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:91879232..91881691-chr5:91884540..91886102,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55652400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917692	0.86[EUR][1000 genomes]
rs56089411	0.80[EUR][1000 genomes]
rs56137763	0.86[EUR][1000 genomes]
rs56327984	0.86[EUR][1000 genomes]
rs57471978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60362039	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66897185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222609	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67283227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67493321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67655085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992943	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779018	0.86[EUR][1000 genomes]
rs72779026	0.86[EUR][1000 genomes]
rs72779033	0.80[EUR][1000 genomes]
rs72779034	0.80[EUR][1000 genomes]
rs72779039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91878800-91882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:91879000-91880800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:91879200-91881400	Enhancers	Fetal Kidney	kidney
4	chr5:91879800-91881600	Enhancers	Fetal Heart	heart
5	chr5:91879800-91882400	Enhancers	Fetal Lung	lung
6	chr5:91879800-91888200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:91880000-91888200	Weak transcription	NH-A	brain
8	chr5:91880200-91887800	Weak transcription	Aorta	Aorta
9	chr5:91880400-91888000	Weak transcription	HSMMtube	muscle
10	chr5:91880600-91886400	Weak transcription	NHDF-Ad	bronchial
11	chr5:91880600-91888400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:91880600-91894800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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