The 2.0 version of rSNPBase

Variant report

Variant rs562634
Chromosome Location chr1:228483629-228483630
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228455400-228484800 Weak transcription A549 lung
2 chr1:228456400-228485800 Weak transcription Hela-S3 cervix
3 chr1:228464200-228491600 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:228464400-228489200 Strong transcription Left Ventricle heart
5 chr1:228464600-228487000 Strong transcription Breast Myoepithelial Primary Cells Breast
6 chr1:228465000-228498000 Weak transcription Fetal Brain Male brain
7 chr1:228467200-228484200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:228471200-228484200 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr1:228471800-228489200 Weak transcription Duodenum Mucosa Duodenum
10 chr1:228472200-228484800 Strong transcription Fetal Muscle Leg muscle
11 chr1:228472200-228490000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr1:228472400-228486000 Weak transcription H9 Cell Line embryonic stem cell
13 chr1:228472400-228486200 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr1:228473000-228488400 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:228476200-228484200 Weak transcription Esophagus oesophagus
16 chr1:228476800-228485600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr1:228479800-228483800 Strong transcription Primary T cells from cord blood blood
18 chr1:228480400-228489600 Strong transcription HSMMtube muscle
19 chr1:228480800-228483800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:228480800-228484600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:228481000-228493600 Strong transcription Fetal Muscle Trunk muscle
22 chr1:228481400-228484600 Strong transcription Primary hematopoietic stem cells blood
23 chr1:228481600-228485000 Weak transcription Fetal Intestine Large intestine
24 chr1:228481800-228487400 Weak transcription Pancreas Pancrea
25 chr1:228481800-228487800 Strong transcription Skeletal Muscle Male skeletal muscle
26 chr1:228482000-228487600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:228482200-228484600 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:228482200-228484800 Strong transcription Primary T helper cells fromperipheralblood blood
29 chr1:228482200-228485600 Weak transcription Fetal Thymus thymus
30 chr1:228482200-228489200 Weak transcription Primary T cells fromperipheralblood blood
31 chr1:228482400-228485000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:228482400-228485000 Weak transcription Aorta Aorta
33 chr1:228482400-228487400 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr1:228482400-228492200 Strong transcription Skeletal Muscle Female skeletal muscle
35 chr1:228482800-228483800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:228482800-228484400 Strong transcription Psoas Muscle Psoas
37 chr1:228482800-228484800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:228482800-228485200 Weak transcription Spleen Spleen
39 chr1:228482800-228485600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:228482800-228489200 Weak transcription Fetal Kidney kidney
41 chr1:228483000-228484800 Weak transcription HUES6 Cell Line embryonic stem cell
42 chr1:228483000-228485000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:228483000-228486200 Weak transcription Placenta Amnion Placenta Amnion
44 chr1:228483000-228488400 Weak transcription Stomach Smooth Muscle stomach
45 chr1:228483200-228483800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:228483200-228485000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:228483200-228485000 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr1:228483200-228485000 Weak transcription Brain Anterior Caudate brain
49 chr1:228483200-228485400 Weak transcription Brain Germinal Matrix brain
50 chr1:228483200-228485600 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015