Variant report

Variant rs883749
Chromosome Location chr1:228541597-228541598
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228510000-228554600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:228511400-228552400 Weak transcription Psoas Muscle Psoas
3 chr1:228527400-228545800 Weak transcription Fetal Brain Male brain
4 chr1:228527600-228546600 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr1:228527600-228562400 Weak transcription Brain Anterior Caudate brain
6 chr1:228527800-228555800 Weak transcription Gastric stomach
7 chr1:228528200-228543400 Weak transcription HSMMtube muscle
8 chr1:228530000-228547200 Weak transcription Pancreas Pancrea
9 chr1:228531200-228549600 Weak transcription Esophagus oesophagus
10 chr1:228531200-228551200 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:228532200-228545800 Weak transcription Dnd41 blood
12 chr1:228532400-228555200 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:228532400-228562400 Weak transcription Fetal Lung lung
14 chr1:228533200-228545800 Weak transcription Spleen Spleen
15 chr1:228533200-228548200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:228535200-228554200 Weak transcription Right Atrium heart
17 chr1:228535800-228541600 Weak transcription Fetal Heart heart
18 chr1:228536600-228544400 Strong transcription Left Ventricle heart
19 chr1:228537000-228545200 Strong transcription Fetal Muscle Trunk muscle
20 chr1:228537000-228554800 Weak transcription Fetal Intestine Large intestine
21 chr1:228537400-228544200 Strong transcription Right Ventricle heart
22 chr1:228537400-228545600 Strong transcription Fetal Stomach stomach
23 chr1:228537800-228542800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:228538400-228542200 Strong transcription Fetal Intestine Small intestine
25 chr1:228538600-228541600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:228539000-228545000 Strong transcription Fetal Muscle Leg muscle
27 chr1:228539400-228544800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:228539400-228556000 Genic enhancers Skeletal Muscle Male skeletal muscle
29 chr1:228539600-228545200 Weak transcription Colon Smooth Muscle Colon
30 chr1:228539600-228548200 Weak transcription Ovary ovary
31 chr1:228539800-228544600 Strong transcription Primary T cells from cord blood blood
32 chr1:228540000-228541600 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:228540200-228542800 Genic enhancers Breast Myoepithelial Primary Cells Breast
34 chr1:228540200-228545800 Weak transcription Thymus Thymus
35 chr1:228540200-228546400 Weak transcription Primary T cells fromperipheralblood blood
36 chr1:228540400-228541600 Strong transcription Fetal Brain Female brain
37 chr1:228540400-228566200 Genic enhancers Skeletal Muscle Female skeletal muscle
38 chr1:228540600-228541600 Enhancers HMEC breast
39 chr1:228540600-228541800 Strong transcription Lung lung
40 chr1:228541000-228542600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:228541000-228565200 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr1:228541000-228565400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:228541200-228541800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:228541200-228544800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:228541400-228542000 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
46 chr1:228541400-228542200 Enhancers NHEK skin
47 chr1:228541400-228542800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:228541400-228542800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:228541400-228562000 Weak transcription Brain Germinal Matrix brain

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