Variant report

Variant	rs56281826
Chromosome Location	chr19:56981552-56981553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11669155	1.00[AMR][1000 genomes]
rs11670383	1.00[EUR][1000 genomes]
rs11670940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11672348	1.00[EUR][1000 genomes]
rs11672698	1.00[EUR][1000 genomes]
rs11878374	1.00[AMR][1000 genomes]
rs11878971	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11883053	1.00[EUR][1000 genomes]
rs1344093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55634464	1.00[EUR][1000 genomes]
rs55887007	1.00[EUR][1000 genomes]
rs55905716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56163051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56342533	1.00[EUR][1000 genomes]
rs56790623	1.00[EUR][1000 genomes]
rs61635147	0.91[EUR][1000 genomes]
rs61740673	1.00[EUR][1000 genomes]
rs8113588	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv580385	chr19:56918598-57072433	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv580386	chr19:56924761-57072433	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56957200-56987400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:56957400-56985000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:56957400-56987400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr19:56957400-56987400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:56967200-56987600	Weak transcription	Fetal Heart	heart
6	chr19:56969400-56987600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:56972800-56987600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:56973000-56981600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:56973400-56981600	Weak transcription	Psoas Muscle	Psoas
10	chr19:56973400-56983600	Weak transcription	Dnd41	blood
11	chr19:56973600-56981800	Weak transcription	Left Ventricle	heart
12	chr19:56974000-56981600	Weak transcription	Right Ventricle	heart
13	chr19:56975600-56985200	ZNF genes & repeats	Brain Germinal Matrix	brain
14	chr19:56975600-56987200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:56976800-56987200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:56978000-56984400	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr19:56979400-56982600	ZNF genes & repeats	Fetal Brain Male	brain
18	chr19:56979800-56981800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
19	chr19:56979800-56985000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr19:56980000-56982400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:56980000-56986000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr19:56980200-56984000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr19:56980200-56984000	ZNF genes & repeats	Fetal Stomach	stomach
24	chr19:56980200-56985000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
25	chr19:56980400-56982200	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr19:56980400-56982200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
27	chr19:56980400-56982200	ZNF genes & repeats	Spleen	Spleen
28	chr19:56980400-56983800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:56980400-56984000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr19:56980400-56985800	ZNF genes & repeats	Fetal Intestine Small	intestine
31	chr19:56980400-56987200	ZNF genes & repeats	Fetal Brain Female	brain
32	chr19:56981000-56982200	ZNF genes & repeats	Fetal Muscle Leg	muscle
33	chr19:56981000-56982400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:56981000-56982600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:56981000-56982600	ZNF genes & repeats	Pancreas	Pancrea
36	chr19:56981000-56984000	Strong transcription	Brain Anterior Caudate	brain
37	chr19:56981000-56984200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr19:56981000-56984800	ZNF genes & repeats	Fetal Intestine Large	intestine
39	chr19:56981000-56987600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr19:56981000-56988000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr19:56981200-56981600	ZNF genes & repeats	Primary T cells from cord blood	blood
42	chr19:56981200-56982400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
43	chr19:56981200-56983400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr19:56981200-56983800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
45	chr19:56981200-56985200	ZNF genes & repeats	Aorta	Aorta
46	chr19:56981200-56985600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr19:56981400-56981600	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr19:56981400-56981800	ZNF genes & repeats	Colonic Mucosa	Colon
49	chr19:56981400-56981800	ZNF genes & repeats	Fetal Kidney	kidney
50	chr19:56981400-56982000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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