Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55881214	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56145015	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57544160	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57656861	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59757791	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6952715	1.00[EUR][1000 genomes]
rs73689816	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689817	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689819	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689820	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689821	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689822	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689824	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689826	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689827	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689828	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689829	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689830	1.00[EUR][1000 genomes]
rs73689831	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689832	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40590000-40595200	Enhancers	Primary hematopoietic stem cells	blood
2	chr7:40591800-40595400	Weak transcription	Aorta	Aorta
3	chr7:40592000-40595600	Weak transcription	Fetal Heart	heart
4	chr7:40592400-40595000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:40592400-40595000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:40592400-40595400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:40592600-40595000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search: