Variant report
| Variant | rs73689817 |
|---|---|
| Chromosome Location | chr7:40599504-40599505 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:40597862..40599690-chr7:40606345..40608569,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55881214 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56145015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56320968 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57544160 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57656861 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59757791 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6952715 | 1.00[EUR][1000 genomes] |
| rs73689816 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689818 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689820 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689821 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689822 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689824 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689826 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689827 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689828 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689829 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689830 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689831 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73689832 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7783260 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030648 | chr7:40218618-41032599 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030515 | chr7:40501867-40634808 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv887987 | chr7:40505382-40748650 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv830971 | chr7:40523075-40700172 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:40596000-40608400 | Weak transcription | Aorta | Aorta |
| 2 | chr7:40598800-40599800 | Enhancers | Fetal Heart | heart |
