Variant report

Variant	rs73689830
Chromosome Location	chr7:40637454-40637455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55881214	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56145015	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56320968	1.00[EUR][1000 genomes]
rs57544160	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57656861	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59757791	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6952715	1.00[EUR][1000 genomes]
rs73689816	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689817	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689818	1.00[EUR][1000 genomes]
rs73689819	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689820	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689821	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689822	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689824	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689826	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689827	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689828	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689829	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689831	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689832	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40630800-40637600	Weak transcription	Aorta	Aorta
2	chr7:40634800-40638200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:40635200-40639600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:40636400-40638400	Enhancers	HepG2	liver
5	chr7:40636600-40637600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:40637000-40637600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:40637200-40637600	Enhancers	Brain Angular Gyrus	brain
8	chr7:40637200-40638600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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