Variant report

Variant	rs73689827
Chromosome Location	chr7:40620058-40620059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55881214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56145015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56320968	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57544160	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57656861	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59757791	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6952715	1.00[EUR][1000 genomes]
rs73689816	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689818	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689826	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689828	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689830	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689831	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689832	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40611800-40623400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:40611800-40626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:40612800-40624600	Weak transcription	NHLF	lung
4	chr7:40618600-40620400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:40618800-40621000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:40619000-40622400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:40619400-40623400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:40619400-40623400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:40619400-40623400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:40619400-40623600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:40619400-40626000	Weak transcription	HSMM	muscle
12	chr7:40619600-40623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:40619600-40623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:40619600-40623200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:40619600-40623400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:40619600-40623400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:40619600-40624000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:40619600-40624200	Weak transcription	Osteobl	bone
19	chr7:40619600-40624400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:40619600-40624400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:40619600-40624400	Weak transcription	NH-A	brain
22	chr7:40619600-40624600	Weak transcription	Dnd41	blood
23	chr7:40619600-40630200	Weak transcription	Aorta	Aorta
24	chr7:40619800-40623200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:40619800-40623200	Weak transcription	HMEC	breast
26	chr7:40619800-40624000	Weak transcription	Muscle Satellite Cultured Cells	--

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