Variant report

Variant	rs73689826
Chromosome Location	chr7:40619254-40619255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55881214	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56145015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56320968	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57544160	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57656861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59757791	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6952715	1.00[EUR][1000 genomes]
rs73689816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689817	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689818	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689819	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689820	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689821	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689822	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689824	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689827	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689828	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689830	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689831	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689832	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40611800-40623400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:40611800-40626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:40612800-40624600	Weak transcription	NHLF	lung
4	chr7:40618600-40619600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:40618600-40619600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:40618600-40619800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:40618600-40620400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:40618800-40619400	Enhancers	HSMM	muscle
9	chr7:40618800-40619600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:40618800-40619600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:40618800-40619600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:40618800-40619600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:40618800-40619600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:40618800-40619600	Enhancers	Aorta	Aorta
15	chr7:40618800-40619600	Enhancers	Dnd41	blood
16	chr7:40618800-40619600	Enhancers	NH-A	brain
17	chr7:40618800-40619600	Enhancers	Osteobl	bone
18	chr7:40618800-40619800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:40618800-40621000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:40619000-40619400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:40619000-40619400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:40619000-40619400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:40619000-40619400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:40619000-40619400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:40619000-40619400	Enhancers	Fetal Thymus	thymus
26	chr7:40619000-40619400	Enhancers	Rectal Smooth Muscle	rectum
27	chr7:40619000-40619600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:40619000-40619800	Enhancers	HMEC	breast
29	chr7:40619000-40619800	Enhancers	HSMMtube	muscle
30	chr7:40619000-40622400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr7:40619200-40619400	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:40619200-40619600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:40619200-40619600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:40619200-40619600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:40619200-40619600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:40619200-40619800	Enhancers	Adipose Nuclei	Adipose

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