Variant report

Variant	rs57656861
Chromosome Location	chr7:40578807-40578808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf11-3	chr7:40577726-40579281	ENSG00000203446.2

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55881214	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56145015	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56320968	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57544160	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59757791	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6952715	1.00[EUR][1000 genomes]
rs73689816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689817	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689818	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689819	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689820	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689821	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689822	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689824	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689827	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689828	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689829	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689830	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689831	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73689832	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv966714	chr7:40576878-40581679	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40567600-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:40568000-40581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:40572400-40580800	Weak transcription	NHDF-Ad	bronchial
4	chr7:40576600-40580000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:40576800-40583800	Weak transcription	Aorta	Aorta
6	chr7:40578200-40586400	Weak transcription	Muscle Satellite Cultured Cells	--

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