Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1072176	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11987992	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11989278	0.84[AMR][1000 genomes]
rs11997724	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57632153	0.84[AMR][1000 genomes]
rs59183651	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60046421	0.84[AMR][1000 genomes]
rs73281903	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73281904	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73281905	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281919	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281921	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281923	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281927	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281928	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281931	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281945	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281949	0.96[EUR][1000 genomes]
rs73692202	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73694216	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88968400-88974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:88970800-88972200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:88970800-88972400	Enhancers	HUVEC	blood vessel
4	chr8:88970800-88972600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:88970800-88973000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:88971000-88972200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:88971000-88972600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:88971000-88972800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:88971200-88971600	Weak transcription	Fetal Kidney	kidney
10	chr8:88971200-88972400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:88971200-88972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:88971200-88972400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:88971200-88972800	Enhancers	HUES64 Cell Line	embryonic stem cell

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