Variant report

Variant	rs11989278
Chromosome Location	chr8:88930612-88930613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:88910926..88912766-chr8:88929269..88932098,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1072176	0.91[AMR][1000 genomes]
rs11987992	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11997724	0.87[AMR][1000 genomes]
rs278890	0.84[YRI][hapmap]
rs278892	0.84[YRI][hapmap]
rs56801851	0.84[AMR][1000 genomes]
rs57632153	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58092272	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58257363	0.87[AMR][1000 genomes]
rs59183651	0.87[AMR][1000 genomes]
rs60046421	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7003732	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73280277	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73281903	0.96[AMR][1000 genomes]
rs73281904	0.91[AMR][1000 genomes]
rs73281905	0.91[AMR][1000 genomes]
rs73281919	0.91[AMR][1000 genomes]
rs73281921	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73281923	0.87[AMR][1000 genomes]
rs73281927	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73281928	0.91[AMR][1000 genomes]
rs73281931	0.91[AMR][1000 genomes]
rs73692202	0.96[AMR][1000 genomes]
rs7845687	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891169	chr8:88803575-88948825	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv6292	chr8:88920735-88965372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88926600-88931400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:88926800-88931200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:88927000-88931000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:88927600-88930800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:88927600-88932000	Enhancers	Rectal Smooth Muscle	rectum
6	chr8:88928000-88931400	Enhancers	Brain Substantia Nigra	brain
7	chr8:88928200-88930800	Weak transcription	Aorta	Aorta
8	chr8:88928200-88931000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:88928600-88931000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr8:88928600-88931400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:88928800-88931200	Enhancers	Osteobl	bone
12	chr8:88928800-88932400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:88929000-88931200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:88929000-88931200	Enhancers	NHDF-Ad	bronchial
15	chr8:88929200-88931200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:88929400-88932200	Enhancers	Colon Smooth Muscle	Colon
17	chr8:88929600-88931400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:88929800-88930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr8:88929800-88930800	Enhancers	Brain Hippocampus Middle	brain
20	chr8:88929800-88931200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:88930000-88931000	Enhancers	NH-A	brain
22	chr8:88930000-88931200	Enhancers	Brain Anterior Caudate	brain
23	chr8:88930000-88931600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:88930200-88931000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr8:88930400-88930800	Enhancers	Primary hematopoietic stem cells	blood
26	chr8:88930600-88930800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr8:88930600-88931000	Enhancers	Brain Angular Gyrus	brain
28	chr8:88930600-88931200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:88930600-88931200	Enhancers	Brain Cingulate Gyrus	brain

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