Variant report
| Variant | rs58092272 |
|---|---|
| Chromosome Location | chr8:88941642-88941643 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:88934395..88939175-chr8:88941122..88944272,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1072176 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs11987992 | 0.91[AMR][1000 genomes] |
| rs11989278 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11997724 | 0.91[AMR][1000 genomes] |
| rs57632153 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs58257363 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs59183651 | 0.91[AMR][1000 genomes] |
| rs60046421 | 0.86[AMR][1000 genomes] |
| rs7003732 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73280265 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs73280277 | 0.91[AMR][1000 genomes] |
| rs73281903 | 0.91[AMR][1000 genomes] |
| rs73281904 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73281905 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73281919 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73281921 | 0.87[AMR][1000 genomes] |
| rs73281923 | 0.91[AMR][1000 genomes] |
| rs73281927 | 0.87[AMR][1000 genomes] |
| rs73281928 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73281931 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73692202 | 0.91[AMR][1000 genomes] |
| rs7845687 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891169 | chr8:88803575-88948825 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv831385 | chr8:88807262-88965472 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029898 | chr8:88837956-89606641 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv6292 | chr8:88920735-88965372 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv428520 | chr8:88933423-89089323 | Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:88940800-88942600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
