Variant report

Variant	rs59183651
Chromosome Location	chr8:88972250-88972251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1072176	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987992	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11989278	0.87[AMR][1000 genomes]
rs11997724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56801851	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57632153	0.86[AMR][1000 genomes]
rs58092272	0.91[AMR][1000 genomes]
rs58257363	0.91[AMR][1000 genomes]
rs60046421	0.86[AMR][1000 genomes]
rs7003732	0.91[AMR][1000 genomes]
rs73280277	0.82[AMR][1000 genomes]
rs73281903	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281904	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281905	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73281919	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281921	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281923	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281927	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281928	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281931	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281945	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73281949	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73692202	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73694216	0.96[EUR][1000 genomes]
rs7845687	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88968400-88974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:88970800-88972400	Enhancers	HUVEC	blood vessel
3	chr8:88970800-88972600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:88970800-88973000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:88971000-88972600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:88971000-88972800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:88971200-88972400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:88971200-88972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:88971200-88972400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:88971200-88972800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:88971400-88972600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:88971400-88972600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:88971600-88972600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:88971800-88972400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:88971800-88972600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:88971800-88972600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:88972200-88976800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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