Variant report

Variant	rs11987992
Chromosome Location	chr8:88964754-88964755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1072176	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11989278	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11997724	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs278885	0.81[AFR][1000 genomes]
rs278895	0.80[AFR][1000 genomes]
rs56801851	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57632153	0.86[AMR][1000 genomes]
rs58092272	0.91[AMR][1000 genomes]
rs58257363	0.91[AMR][1000 genomes]
rs59183651	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60046421	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7003732	0.91[AMR][1000 genomes]
rs73280277	0.82[AMR][1000 genomes]
rs73281903	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281904	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281905	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73281919	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73281921	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281923	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73281927	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281928	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73281931	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73281945	0.96[EUR][1000 genomes]
rs73281949	0.91[EUR][1000 genomes]
rs73692202	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73694216	0.96[EUR][1000 genomes]
rs7845687	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv6292	chr8:88920735-88965372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88962800-88971000	Weak transcription	Fetal Kidney	kidney

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