Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:41217262..41220016-chr8:88924043..88926117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163697	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1072176	0.86[AMR][1000 genomes]
rs11987992	0.82[AMR][1000 genomes]
rs11989278	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11997724	0.82[AMR][1000 genomes]
rs57632153	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs58092272	0.91[AMR][1000 genomes]
rs58257363	0.91[AMR][1000 genomes]
rs59183651	0.82[AMR][1000 genomes]
rs60046421	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7003732	0.91[AMR][1000 genomes]
rs73280265	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281903	0.91[AMR][1000 genomes]
rs73281904	0.86[AMR][1000 genomes]
rs73281905	0.86[AMR][1000 genomes]
rs73281919	0.86[AMR][1000 genomes]
rs73281921	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73281923	0.82[AMR][1000 genomes]
rs73281927	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73281928	0.86[AMR][1000 genomes]
rs73281931	0.86[AMR][1000 genomes]
rs73692202	0.91[AMR][1000 genomes]
rs7845687	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891169	chr8:88803575-88948825	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv6292	chr8:88920735-88965372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88918000-88926600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:88924800-88925200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:88924800-88926200	Weak transcription	Aorta	Aorta
4	chr8:88924800-88926600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:88925000-88927400	Weak transcription	Fetal Brain Male	brain

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