Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1072176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11987992	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11989278	0.91[AMR][1000 genomes]
rs11997724	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56801851	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57632153	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58092272	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs58257363	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs59183651	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60046421	0.91[AMR][1000 genomes]
rs7003732	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs73280277	0.86[AMR][1000 genomes]
rs73281903	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73281919	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281921	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73281923	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281927	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73281928	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281945	0.88[EUR][1000 genomes]
rs73281949	0.84[EUR][1000 genomes]
rs73692202	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694216	0.88[EUR][1000 genomes]
rs7845687	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv6292	chr8:88920735-88965372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88949600-88952400	Enhancers	HUVEC	blood vessel
2	chr8:88950000-88952800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:88951400-88952600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:88951400-88952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:88951400-88952800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:88951600-88956000	Weak transcription	NH-A	brain
7	chr8:88951800-88955000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:88952000-88953200	Weak transcription	Osteobl	bone

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