The 2.0 version of rSNPBase

Variant report

Variant rs56802207
Chromosome Location chr1:173406861-173406862
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173376200-173429000 Weak transcription Gastric stomach
2 chr1:173387600-173429000 Weak transcription Lung lung
3 chr1:173391800-173429000 Weak transcription Ovary ovary
4 chr1:173399400-173408600 Weak transcription Aorta Aorta
5 chr1:173399400-173410000 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:173399400-173410800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:173399400-173410800 Weak transcription Pancreas Pancrea
8 chr1:173399400-173414400 Weak transcription Spleen Spleen
9 chr1:173399400-173424200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:173399600-173408000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr1:173399600-173408000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:173399600-173408200 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:173399600-173408600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr1:173399600-173412800 Weak transcription Thymus Thymus
15 chr1:173399800-173413000 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:173399800-173413800 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr1:173399800-173415400 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:173399800-173415600 Weak transcription Liver Liver
19 chr1:173400000-173407400 Weak transcription Primary neutrophils fromperipheralblood blood
20 chr1:173400200-173408000 Weak transcription Stomach Smooth Muscle stomach
21 chr1:173400200-173408000 Weak transcription HepG2 liver
22 chr1:173400200-173421000 Weak transcription Psoas Muscle Psoas
23 chr1:173400200-173422800 Weak transcription NH-A brain
24 chr1:173400400-173429000 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr1:173400600-173413000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:173400600-173413600 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:173400600-173413800 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr1:173400600-173428800 Weak transcription Fetal Stomach stomach
29 chr1:173400800-173408000 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:173400800-173408200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:173400800-173408600 Weak transcription Primary monocytes fromperipheralblood blood
32 chr1:173400800-173410800 Weak transcription Primary hematopoietic stem cells blood
33 chr1:173400800-173410800 Weak transcription Brain Angular Gyrus brain
34 chr1:173400800-173411200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:173400800-173412600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:173400800-173413400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:173400800-173413800 Weak transcription Primary B cells from peripheral blood blood
38 chr1:173400800-173413800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr1:173400800-173413800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:173400800-173413800 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr1:173400800-173414000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr1:173400800-173414200 Weak transcription Fetal Muscle Trunk muscle
43 chr1:173400800-173420600 Weak transcription Hela-S3 cervix
44 chr1:173400800-173421000 Weak transcription Colon Smooth Muscle Colon
45 chr1:173400800-173422800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:173400800-173429000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:173400800-173429000 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:173401000-173408200 Weak transcription Brain Substantia Nigra brain
49 chr1:173401000-173408600 Weak transcription Brain Inferior Temporal Lobe brain
50 chr1:173401000-173415600 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015