Variant report

Variant	rs56814071
Chromosome Location	chr6:36564421-36564422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36507762..36509333-chr6:36562439..36564848,2	K562	blood:
2	chr6:36561839..36564756-chr6:36723772..36727529,4	MCF-7	breast:
3	chr6:36408693..36414213-chr6:36560362..36565197,15	MCF-7	breast:
4	chr6:36562557..36565797-chr6:36602689..36605789,3	K562	blood:
5	chr6:36560169..36564521-chr6:36645252..36648947,8	MCF-7	breast:
6	chr6:36563235..36565666-chr6:36712198..36714107,2	K562	blood:
7	chr6:35994747..35997938-chr6:36562613..36566068,3	K562	blood:
8	chr6:36467629..36469288-chr6:36562211..36564432,2	K562	blood:
9	chr6:36524973..36526620-chr6:36564386..36565932,2	MCF-7	breast:
10	chr6:36560711..36564837-chr6:36645733..36649715,9	K562	blood:
11	chr6:36562081..36564755-chr6:36642636..36644724,2	K562	blood:
12	chr6:36564389..36567753-chr6:36701819..36705638,3	K562	blood:
13	chr6:36562362..36564787-chr6:36830127..36831778,2	K562	blood:
14	chr6:36562412..36564652-chr6:36674547..36676281,2	K562	blood:
15	chr6:36473121..36475409-chr6:36563660..36565634,2	K562	blood:
16	chr6:36350010..36352729-chr6:36563870..36566788,2	MCF-7	breast:
17	chr6:36334277..36337187-chr6:36562769..36565035,2	MCF-7	breast:
18	chr6:36562562..36564924-chr6:36814453..36817314,2	K562	blood:
19	chr5:137802833..137805603-chr6:36563946..36565718,2	K562	blood:
20	chr6:36340665..36342741-chr6:36562603..36564445,2	MCF-7	breast:
21	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
22	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
23	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
24	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
25	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
26	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
27	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
28	chr6:36427110..36428848-chr6:36563217..36564833,2	K562	blood:
29	chr6:36563465..36565521-chr6:36853930..36855526,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000220349	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11552549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56799886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56845418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59715484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61631302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62402215	0.86[ASN][1000 genomes]
rs73408319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408360	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73408367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410228	0.91[AFR][1000 genomes]
rs73410230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410240	0.92[EUR][1000 genomes]
rs73410246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36561000-36564600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:36561000-36564600	Active TSS	Thymus	Thymus
3	chr6:36561000-36565000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:36561200-36564600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:36561200-36564600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:36561200-36564600	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:36561200-36564600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:36561200-36564600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:36561200-36564600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr6:36561200-36564600	Active TSS	Esophagus	oesophagus
11	chr6:36561200-36564600	Active TSS	Left Ventricle	heart
12	chr6:36561200-36564600	Active TSS	Pancreas	Pancrea
13	chr6:36561200-36564600	Active TSS	Small Intestine	intestine
14	chr6:36561200-36564800	Active TSS	Colonic Mucosa	Colon
15	chr6:36561200-36564800	Active TSS	Stomach Mucosa	stomach
16	chr6:36561200-36565000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:36561200-36565000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:36561200-36565000	Active TSS	Colon Smooth Muscle	Colon
19	chr6:36561200-36565000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:36561200-36565400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:36561200-36566600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:36561400-36564600	Active TSS	Lung	lung
23	chr6:36561400-36564600	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:36561400-36565000	Active TSS	Right Ventricle	heart
25	chr6:36561400-36565200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:36561600-36564600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:36561600-36564600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:36561600-36564600	Active TSS	Brain Hippocampus Middle	brain
29	chr6:36561600-36564600	Active TSS	Fetal Stomach	stomach
30	chr6:36561600-36564600	Active TSS	Ovary	ovary
31	chr6:36561600-36564600	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:36561600-36564600	Active TSS	NHDF-Ad	bronchial
33	chr6:36561600-36565000	Active TSS	Aorta	Aorta
34	chr6:36561800-36564600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:36561800-36564600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr6:36561800-36564600	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr6:36561800-36564600	Active TSS	Duodenum Mucosa	Duodenum
38	chr6:36561800-36564600	Active TSS	Fetal Intestine Large	intestine
39	chr6:36561800-36564600	Active TSS	Fetal Intestine Small	intestine
40	chr6:36561800-36564600	Active TSS	Fetal Muscle Leg	muscle
41	chr6:36561800-36564600	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:36561800-36564600	Active TSS	NHLF	lung
43	chr6:36561800-36565000	Active TSS	Gastric	stomach
44	chr6:36561800-36565200	Active TSS	HSMMtube	muscle
45	chr6:36561800-36565600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:36561800-36565800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:36562000-36564600	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr6:36562000-36564600	Active TSS	HUVEC	blood vessel
49	chr6:36562200-36568600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:36562200-36569600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links