Variant report

Variant	rs73410214
Chromosome Location	chr6:36586433-36586434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36560147..36563115-chr6:36583290..36586595,4	MCF-7	breast:
2	chr6:36585115..36587605-chr6:36611559..36613205,2	K562	blood:
3	chr6:36386854..36389830-chr6:36585117..36586872,2	MCF-7	breast:
4	chr6:36583162..36585215-chr6:36586177..36589221,3	MCF-7	breast:
5	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
6	chr6:36584907..36586917-chr6:36625809..36627593,2	K562	blood:
7	chr6:36585463..36588100-chr6:36589311..36592399,3	MCF-7	breast:
8	chr6:36584982..36587013-chr6:36719962..36722309,3	MCF-7	breast:
9	chr6:36581763..36584734-chr6:36584798..36588303,5	K562	blood:
10	chr6:36584813..36586612-chr6:36830505..36832911,2	K562	blood:
11	chr6:36578336..36580257-chr6:36585144..36586920,2	MCF-7	breast:
12	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
13	chr6:36584679..36586444-chr6:36633785..36636710,2	MCF-7	breast:
14	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000263894	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11552549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56799886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56814071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56845418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59715484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61631302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62402215	0.86[ASN][1000 genomes]
rs73408319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408360	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73408367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410228	0.91[AFR][1000 genomes]
rs73410230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410240	0.92[EUR][1000 genomes]
rs73410246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
2	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
4	chr6:36577800-36587800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:36577800-36591000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:36577800-36595200	Weak transcription	Small Intestine	intestine
7	chr6:36580200-36586600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:36580200-36590800	Weak transcription	NHLF	lung
9	chr6:36580200-36591000	Weak transcription	Ovary	ovary
10	chr6:36580200-36591000	Weak transcription	NH-A	brain
11	chr6:36580200-36599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:36580400-36587000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:36580400-36590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:36580400-36591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:36580400-36593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:36581400-36586600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:36581400-36586600	Weak transcription	HepG2	liver
18	chr6:36581400-36588200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:36581400-36590800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:36581400-36590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:36581400-36591000	Weak transcription	Primary T cells from cord blood	blood
22	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:36581400-36591000	Weak transcription	Fetal Kidney	kidney
25	chr6:36581400-36591000	Weak transcription	Dnd41	blood
26	chr6:36581400-36604400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:36581600-36589600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:36581600-36590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:36581600-36591000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:36581600-36591200	Weak transcription	Fetal Lung	lung
31	chr6:36581800-36586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:36581800-36590800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:36582000-36591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:36582200-36586800	Enhancers	Liver	Liver
35	chr6:36582200-36595400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:36583000-36590800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:36583200-36587200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:36583400-36590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:36583600-36590800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:36583600-36591000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:36584200-36586600	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr6:36584200-36586600	Enhancers	NHEK	skin
44	chr6:36584200-36587000	Enhancers	Stomach Mucosa	stomach
45	chr6:36584400-36586800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:36584400-36587200	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:36584600-36587200	Strong transcription	Fetal Stomach	stomach
48	chr6:36584600-36591400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:36584800-36591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:36585000-36589400	Weak transcription	Brain Germinal Matrix	brain

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