Variant report

Variant	rs56900950
Chromosome Location	chr6:36581225-36581226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
2	chr6:36454716..36456813-chr6:36580873..36583676,2	K562	blood:
3	chr6:36578752..36581618-chr6:36589412..36591182,2	K562	blood:
4	chr6:36580937..36583025-chr6:36583380..36584912,2	MCF-7	breast:
5	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
6	chr6:36574853..36581451-chr6:36644915..36649997,7	K562	blood:
7	chr6:36580200..36582709-chr6:36638711..36641667,2	K562	blood:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000263894	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000213500	Chromatin interaction
ENSG00000251864	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11552549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56799886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56814071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56845418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59715484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61631302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62402215	0.86[ASN][1000 genomes]
rs73408319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408360	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73408367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410228	0.91[AFR][1000 genomes]
rs73410230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410240	0.92[EUR][1000 genomes]
rs73410246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
8	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:36570400-36581600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:36570600-36582000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:36571000-36581600	Strong transcription	Primary B cells from cord blood	blood
13	chr6:36571200-36581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:36571200-36582200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
16	chr6:36571800-36582200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:36572000-36581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
19	chr6:36572600-36581400	Strong transcription	Dnd41	blood
20	chr6:36572600-36582200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:36573600-36582800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:36574000-36581600	Strong transcription	Brain Germinal Matrix	brain
23	chr6:36575400-36581600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:36575600-36583200	Weak transcription	Hela-S3	cervix
25	chr6:36576000-36581400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:36576000-36581400	Strong transcription	Primary T cells from cord blood	blood
27	chr6:36576000-36581600	Strong transcription	Fetal Lung	lung
28	chr6:36576000-36581800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:36576200-36581400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:36576200-36581800	Strong transcription	Lung	lung
31	chr6:36576200-36586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
33	chr6:36576600-36581600	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr6:36576600-36581600	Strong transcription	Fetal Muscle Leg	muscle
35	chr6:36576600-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:36576600-36584600	Weak transcription	Colonic Mucosa	Colon
37	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:36577200-36581600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:36577200-36581600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:36577200-36581600	Strong transcription	Brain Hippocampus Middle	brain
41	chr6:36577400-36581400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:36577400-36581600	Strong transcription	Fetal Brain Female	brain
43	chr6:36577400-36581800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:36577400-36581800	Strong transcription	Adipose Nuclei	Adipose
45	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
46	chr6:36577600-36581400	Strong transcription	Brain Anterior Caudate	brain
47	chr6:36577600-36581600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:36577600-36581600	Strong transcription	Colon Smooth Muscle	Colon
49	chr6:36577600-36581600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:36577600-36581600	Strong transcription	Left Ventricle	heart

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